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style: change to flake8 style

This commit is contained in:
zweien 2021-07-12 16:03:42 +08:00
parent 897293b698
commit e4c1a46501
10 changed files with 1056 additions and 617 deletions
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2
.flake8
View File

@ -1,2 +1,2 @@
[flake8]
ignore = E203, W503, E501, E231, F401, F403
ignore = E203, W503, E501, E231, F401, F403, E722, E731

2
docs/conf.py
View File

@ -64,7 +64,7 @@ html_theme = 'sphinx_rtd_theme'
html_static_path = ['_static']
# for MarkdownParser
from sphinx_markdown_parser.parser import MarkdownParser
from sphinx_markdown_parser.parser import MarkdownParser # noqa
# def setup(app):

188
examples/allen_cahn/allen_cahn.py
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@ -8,16 +8,16 @@ import os
import torch
# parameter phase
L = 1.
L = 1.0
# define geometry
geo = sc.Line1D(-1.0, 1.0)
# define sympy varaibles to parametize domain curves
t_symbol = Symbol('t')
x = Symbol('x')
u = sp.Function('u')(x, t_symbol)
up = sp.Function('up')(x, t_symbol)
t_symbol = Symbol("t")
x = Symbol("x")
u = sp.Function("u")(x, t_symbol)
up = sp.Function("up")(x, t_symbol)
time_range = {t_symbol: (0, L)}
@ -25,52 +25,62 @@ time_range = {t_symbol: (0, L)}
@sc.datanode
class AllenInit(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return geo.sample_interior(density=300, param_ranges={t_symbol: 0.0}), \
{'u': x ** 2 * sp.cos(sp.pi * x), 'lambda_u': 100}
return geo.sample_interior(density=300, param_ranges={t_symbol: 0.0}), {
"u": x ** 2 * sp.cos(sp.pi * x),
"lambda_u": 100,
}
@sc.datanode
class AllenBc(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return geo.sample_boundary(density=200, sieve=sp.Eq(x, -1), param_ranges=time_range), \
{'difference_u_up': 0,
'difference_diff_u_diff_up': 0,
}
return geo.sample_boundary(
density=200, sieve=sp.Eq(x, -1), param_ranges=time_range
), {
"difference_u_up": 0,
"difference_diff_u_diff_up": 0,
}
@sc.datanode(name='allen_domain')
@sc.datanode(name="allen_domain")
class AllenEq(sc.SampleDomain):
def __init__(self):
self.points = geo.sample_interior(density=2000, param_ranges=time_range, low_discrepancy=True)
self.points = geo.sample_interior(
density=2000, param_ranges=time_range, low_discrepancy=True
)
def sampling(self, *args, **kwargs):
constraints = {'AllenCahn_u': 0}
constraints = {"AllenCahn_u": 0}
return self.points, constraints
@sc.datanode(name='data_evaluate')
@sc.datanode(name="data_evaluate")
class AllenPointsInference(sc.SampleDomain):
def __init__(self):
self.points = geo.sample_interior(density=5000, param_ranges=time_range, low_discrepancy=True)
self.points = geo.sample_interior(
density=5000, param_ranges=time_range, low_discrepancy=True
)
self.points = sc.Variables(self.points).to_torch_tensor_()
self.constraints = {'AllenCahn_u': torch.zeros_like(self.points['x'])}
self.constraints = {"AllenCahn_u": torch.zeros_like(self.points["x"])}
def sampling(self, *args, **kwargs):
return self.points, self.constraints
@sc.datanode(name='re_sampling_domain')
@sc.datanode(name="re_sampling_domain")
class SpaceAdaptiveSampling(sc.SampleDomain):
def __init__(self):
self.points = geo.sample_interior(density=100, param_ranges=time_range, low_discrepancy=True)
self.points = geo.sample_interior(
density=100, param_ranges=time_range, low_discrepancy=True
)
self.points = sc.Variables(self.points).to_torch_tensor_()
self.constraints = {'AllenCahn_u': torch.zeros_like(self.points['x'])}
self.constraints = {"AllenCahn_u": torch.zeros_like(self.points["x"])}
def sampling(self, *args, **kwargs):
return self.points, self.constraints
@sc.datanode(name='allen_test')
@sc.datanode(name="allen_test")
def generate_plot_data():
x = np.linspace(-1.0, 1.0, 100)
t = np.linspace(0, 1.0, 100)
@ -82,76 +92,122 @@ def generate_plot_data():
# computational node phase
net_u = sc.MLP([2, 128, 128, 128, 128, 2], activation=sc.Activation.tanh)
net_u = sc.NetNode(inputs=('x', 't',), outputs=('u',), name='net1', net=net_u)
xp = sc.ExpressionNode(name='xp', expression=x + 2)
get_tilde_u = sc.get_shared_net_node(net_u, inputs=('xp', 't',), outputs=('up',), name='net2', arch='mlp')
net_u = sc.NetNode(
inputs=(
"x",
"t",
),
outputs=("u",),
name="net1",
net=net_u,
)
xp = sc.ExpressionNode(name="xp", expression=x + 2)
get_tilde_u = sc.get_shared_net_node(
net_u,
inputs=(
"xp",
"t",
),
outputs=("up",),
name="net2",
arch="mlp",
)
diff_u = sc.ExpressionNode(expression=u.diff(x), name='diff_u')
diff_up = sc.ExpressionNode(expression=up.diff(x), name='diff_up')
diff_u = sc.ExpressionNode(expression=u.diff(x), name="diff_u")
diff_up = sc.ExpressionNode(expression=up.diff(x), name="diff_up")
pde = sc.AllenCahnNode(u='u', gamma_1=0.0001, gamma_2=5)
pde = sc.AllenCahnNode(u="u", gamma_1=0.0001, gamma_2=5)
boundary_up = sc.Difference(T='diff_u', S='diff_up')
boundary_u = sc.Difference(T='u', S='up')
boundary_up = sc.Difference(T="diff_u", S="diff_up")
boundary_u = sc.Difference(T="u", S="up")
# Receiver hook phase
class SpaceAdaptiveReceiver(sc.Receiver):
def receive_notify(self, solver, message):
if sc.Signal.TRAIN_PIPE_END in message.keys() and solver.global_step % 1000 == 0:
sc.logger.info('space adaptive sampling...')
results = solver.infer_step({'data_evaluate': ['x', 't', 'sdf', 'AllenCahn_u']})
residual_data = results['data_evaluate']['AllenCahn_u'].detach().cpu().numpy().ravel()
if (
sc.Signal.TRAIN_PIPE_END in message.keys()
and solver.global_step % 1000 == 0
):
sc.logger.info("space adaptive sampling...")
results = solver.infer_step(
{"data_evaluate": ["x", "t", "sdf", "AllenCahn_u"]}
)
residual_data = (
results["data_evaluate"]["AllenCahn_u"].detach().cpu().numpy().ravel()
)
# sort the points by residual loss
index = np.argsort(-1. * np.abs(residual_data))[:200]
_points = {key: values[index].detach().cpu().numpy() for key, values in results['data_evaluate'].items()}
_points.pop('AllenCahn_u')
_points['area'] = np.zeros_like(_points['sdf']) + (1.0 / 200)
solver.set_domain_parameter('re_sampling_domain', {'points': _points})
index = np.argsort(-1.0 * np.abs(residual_data))[:200]
_points = {
key: values[index].detach().cpu().numpy()
for key, values in results["data_evaluate"].items()
}
_points.pop("AllenCahn_u")
_points["area"] = np.zeros_like(_points["sdf"]) + (1.0 / 200)
solver.set_domain_parameter("re_sampling_domain", {"points": _points})
class PostProcessReceiver(sc.Receiver):
def __init__(self):
if not os.path.exists('image'):
os.mkdir('image')
if not os.path.exists("image"):
os.mkdir("image")
def receive_notify(self, solver, message):
if sc.Signal.TRAIN_PIPE_END in message.keys() and solver.global_step % 1000 == 1:
sc.logger.info('Post Processing...')
points = s.infer_step({'allen_test': ['x', 't', 'u']})
triang_total = tri.Triangulation(points['allen_test']['t'].detach().cpu().numpy().ravel(),
points['allen_test']['x'].detach().cpu().numpy().ravel(), )
plt.tricontourf(triang_total, points['allen_test']['u'].detach().cpu().numpy().ravel(), 100, vmin=-1,
vmax=1)
if (
sc.Signal.TRAIN_PIPE_END in message.keys()
and solver.global_step % 1000 == 1
):
sc.logger.info("Post Processing...")
points = s.infer_step({"allen_test": ["x", "t", "u"]})
triang_total = tri.Triangulation(
points["allen_test"]["t"].detach().cpu().numpy().ravel(),
points["allen_test"]["x"].detach().cpu().numpy().ravel(),
)
plt.tricontourf(
triang_total,
points["allen_test"]["u"].detach().cpu().numpy().ravel(),
100,
vmin=-1,
vmax=1,
)
tc_bar = plt.colorbar()
tc_bar.ax.tick_params(labelsize=12)
_points = solver.get_domain_parameter('re_sampling_domain', 'points')
if not isinstance(_points['t'], torch.Tensor):
plt.scatter(_points['t'].ravel(), _points['x'].ravel(), marker='x', s=8)
_points = solver.get_domain_parameter("re_sampling_domain", "points")
if not isinstance(_points["t"], torch.Tensor):
plt.scatter(_points["t"].ravel(), _points["x"].ravel(), marker="x", s=8)
else:
plt.scatter(_points['t'].detach().cpu().numpy().ravel(),
_points['x'].detach().cpu().numpy().ravel(), marker='x', s=8)
plt.scatter(
_points["t"].detach().cpu().numpy().ravel(),
_points["x"].detach().cpu().numpy().ravel(),
marker="x",
s=8,
)
plt.xlabel('$t$')
plt.ylabel('$x$')
plt.title('$u(x,t)$')
plt.savefig(f'image/result_{solver.global_step}.png')
plt.xlabel("$t$")
plt.ylabel("$x$")
plt.title("$u(x,t)$")
plt.savefig(f"image/result_{solver.global_step}.png")
plt.show()
# Solver phase
s = sc.Solver(sample_domains=(AllenInit(),
AllenBc(),
AllenEq(),
AllenPointsInference(),
SpaceAdaptiveSampling(),
generate_plot_data()),
netnodes=[net_u, get_tilde_u],
pdes=[pde, xp, diff_up, diff_u, boundary_up, boundary_u],
max_iter=60000,
loading=True)
s = sc.Solver(
sample_domains=(
AllenInit(),
AllenBc(),
AllenEq(),
AllenPointsInference(),
SpaceAdaptiveSampling(),
generate_plot_data(),
),
netnodes=[net_u, get_tilde_u],
pdes=[pde, xp, diff_up, diff_u, boundary_up, boundary_u],
max_iter=60000,
loading=True,
)
s.register_receiver(SpaceAdaptiveReceiver())
s.register_receiver(PostProcessReceiver())

6
idrlnet/callbacks.py
View File

@ -13,7 +13,7 @@ __all__ = ['GradientReceiver', 'SummaryReceiver', 'HandleResultReceiver']
class GradientReceiver(Receiver):
"""Register the receiver to monitor gradient norm on the Tensorboard."""
def receive_notify(self, solver: 'Solver', message):
def receive_notify(self, solver: 'Solver', message): # noqa
if not (Signal.TRAIN_PIPE_END in message):
return
for netnode in solver.netnodes:
@ -34,7 +34,7 @@ class SummaryReceiver(SummaryWriter, Receiver):
def __init__(self, *args, **kwargs):
SummaryWriter.__init__(self, *args, **kwargs)
def receive_notify(self, solver: 'Solver', message: Dict):
def receive_notify(self, solver: 'Solver', message: Dict): # noqa
if Signal.AFTER_COMPUTE_LOSS in message.keys():
loss_component = message[Signal.AFTER_COMPUTE_LOSS]
self.add_scalars('loss_overview', loss_component, solver.global_step)
@ -51,7 +51,7 @@ class HandleResultReceiver(Receiver):
def __init__(self, result_dir):
self.result_dir = result_dir
def receive_notify(self, solver: 'Solver', message: Dict):
def receive_notify(self, solver: 'Solver', message: Dict): # noqa
if Signal.SOLVE_END in message.keys():
samples = solver.sample_variables_from_domains()
in_var, _, lambda_out = solver.generate_in_out_dict(samples)

190
idrlnet/geo_utils/geo.py
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@ -23,7 +23,7 @@ class CheckMeta(type):
class AbsGeoObj(metaclass=abc.ABCMeta):
@abc.abstractmethod
def rotation(self, angle: float, axis: str = 'z'):
def rotation(self, angle: float, axis: str = "z"):
pass
@abc.abstractmethod
@ -43,16 +43,24 @@ class Edge(AbsGeoObj):
@property
def axes(self) -> List[str]:
return [key for key in self.functions if not key.startswith('normal')]
return [key for key in self.functions if not key.startswith("normal")]
def rotation(self, angle: float, axis: str = 'z'):
assert len(self.axes) > 1, 'Cannot rotate a object with dim<2'
def rotation(self, angle: float, axis: str = "z"):
assert len(self.axes) > 1, "Cannot rotate a object with dim<2"
rotated_dims = [key for key in self.axes if key != axis]
rd1, rd2, n = rotated_dims[0], rotated_dims[1], 'normal_'
self.functions[rd1] = (cos(angle) * self.functions[rd1] - sin(angle) * self.functions[rd2])
self.functions[n + rd1] = cos(angle) * self.functions[n + rd1] - sin(angle) * self.functions[n + rd2]
self.functions[rd2] = (sin(angle) * self.functions[rd1] + cos(angle) * self.functions[rd2])
self.functions[n + rd2] = sin(angle) * self.functions[n + rd1] + cos(angle) * self.functions[n + rd2]
rd1, rd2, n = rotated_dims[0], rotated_dims[1], "normal_"
self.functions[rd1] = (
cos(angle) * self.functions[rd1] - sin(angle) * self.functions[rd2]
)
self.functions[n + rd1] = (
cos(angle) * self.functions[n + rd1] - sin(angle) * self.functions[n + rd2]
)
self.functions[rd2] = (
sin(angle) * self.functions[rd1] + cos(angle) * self.functions[rd2]
)
self.functions[n + rd2] = (
sin(angle) * self.functions[n + rd1] + cos(angle) * self.functions[n + rd2]
)
return self
def scaling(self, scale: float):
@ -62,20 +70,28 @@ class Edge(AbsGeoObj):
return self
def translation(self, direction):
assert len(direction) == len(self.axes), 'Moving direction must have the save dimension with the object'
assert len(direction) == len(
self.axes
), "Moving direction must have the save dimension with the object"
for key, x in zip(self.axes, direction):
self.functions[key] += x
return self
def sample(self, density: int, param_ranges=None, low_discrepancy=False) -> Dict[str, np.ndarray]:
def sample(
self, density: int, param_ranges=None, low_discrepancy=False
) -> Dict[str, np.ndarray]:
param_ranges = {} if param_ranges is None else param_ranges
inputs = {**self.ranges, **param_ranges}.keys()
area_fn = lambdify_np(self.area, inputs)
param_points = _ranged_sample(100, ranges={**self.ranges, **param_ranges})
nr_points = int(density * (np.mean(area_fn(**param_points))))
lambdify_functions = {'area': lambda **x: area_fn(**x) / next(iter(x.values())).shape[0]}
param_points = _ranged_sample(nr_points, {**self.ranges, **param_ranges}, low_discrepancy)
lambdify_functions = {
"area": lambda **x: area_fn(**x) / next(iter(x.values())).shape[0]
}
param_points = _ranged_sample(
nr_points, {**self.ranges, **param_ranges}, low_discrepancy
)
data_var = {}
for key, function in self.functions.items():
@ -105,104 +121,138 @@ class Geometry(AbsGeoObj, metaclass=AbsCheckMix):
if type(self) in [Geometry, Geometry1D, Geometry2D, Geometry3D]:
return
if self.edges is None:
raise NotImplementedError('Geometry must define edges')
raise NotImplementedError("Geometry must define edges")
if self.bounds is None:
raise NotImplementedError('Geometry must define bounds')
raise NotImplementedError("Geometry must define bounds")
if self.sdf is None:
raise NotImplementedError('Geometry must define sdf')
raise NotImplementedError("Geometry must define sdf")
@property
def axes(self) -> List[str]:
return self.edges[0].axes
def translation(self, direction: Union[List, Tuple]) -> 'Geometry':
def translation(self, direction: Union[List, Tuple]) -> "Geometry":
assert len(direction) == len(self.axes)
[edge.translation(direction) for edge in self.edges]
self.sdf = self.sdf.subs([(Symbol(dim), Symbol(dim) - x) for dim, x in zip(self.axes, direction)])
self.bounds = {dim: (self.bounds[dim][0] + x, self.bounds[dim][1] + x) for dim, x in zip(self.axes, direction)}
self.sdf = self.sdf.subs(
[(Symbol(dim), Symbol(dim) - x) for dim, x in zip(self.axes, direction)]
)
self.bounds = {
dim: (self.bounds[dim][0] + x, self.bounds[dim][1] + x)
for dim, x in zip(self.axes, direction)
}
return self
def rotation(self, angle: float, axis: str = 'z', center=None) -> 'Geometry':
def rotation(self, angle: float, axis: str = "z", center=None) -> "Geometry":
if center is not None:
self.translation([-x for x in center])
[edge.rotation(angle, axis) for edge in self.edges]
rotated_dims = [key for key in self.axes if key != axis]
sp_0 = Symbol(rotated_dims[0])
_sp_0 = Symbol('tmp_0')
_sp_0 = Symbol("tmp_0")
sp_1 = Symbol(rotated_dims[1])
_sp_1 = Symbol('tmp_1')
self.sdf = self.sdf.subs({sp_0: cos(angle) * _sp_0 + sin(angle) * _sp_1,
sp_1: - sin(angle) * _sp_0 + cos(angle) * _sp_1})
_sp_1 = Symbol("tmp_1")
self.sdf = self.sdf.subs(
{
sp_0: cos(angle) * _sp_0 + sin(angle) * _sp_1,
sp_1: -sin(angle) * _sp_0 + cos(angle) * _sp_1,
}
)
self.sdf = self.sdf.subs({_sp_0: sp_0, _sp_1: sp_1})
self.bounds[rotated_dims[0]], self.bounds[rotated_dims[1]] = _rotate_rec(self.bounds[rotated_dims[0]],
self.bounds[rotated_dims[1]],
angle=angle)
self.bounds[rotated_dims[0]], self.bounds[rotated_dims[1]] = _rotate_rec(
self.bounds[rotated_dims[0]], self.bounds[rotated_dims[1]], angle=angle
)
if center is not None:
self.translation(center)
return self
def scaling(self, scale: float, center: Tuple = None) -> 'Geometry':
assert scale > 0, 'scaling must be positive'
def scaling(self, scale: float, center: Tuple = None) -> "Geometry":
assert scale > 0, "scaling must be positive"
if center is not None:
self.translation(tuple([-x for x in center]))
[edge.scaling(scale) for edge in self.edges]
self.sdf = self.sdf.subs({Symbol(dim): Symbol(dim) / scale for dim in self.axes})
self.sdf = self.sdf.subs(
{Symbol(dim): Symbol(dim) / scale for dim in self.axes}
)
self.sdf = scale * self.sdf
for dim in self.axes:
self.bounds[dim] = (self.bounds[dim][0] * scale, self.bounds[dim][1] * scale)
self.bounds[dim] = (
self.bounds[dim][0] * scale,
self.bounds[dim][1] * scale,
)
if center is not None:
self.translation(center)
return self
def duplicate(self) -> 'Geometry':
def duplicate(self) -> "Geometry":
return copy.deepcopy(self)
def sample_boundary(self, density: int, sieve=None, param_ranges: Dict = None, low_discrepancy=False) -> Dict[
str, np.ndarray]:
def sample_boundary(
self, density: int, sieve=None, param_ranges: Dict = None, low_discrepancy=False
) -> Dict[str, np.ndarray]:
param_ranges = dict() if param_ranges is None else param_ranges
points_list = [edge.sample(density, param_ranges, low_discrepancy) for edge in
self.edges]
points = reduce(lambda e1, e2: {_k: np.concatenate([e1[_k], e2[_k]], axis=0) for _k in e1}, points_list)
points_list = [
edge.sample(density, param_ranges, low_discrepancy) for edge in self.edges
]
points = reduce(
lambda e1, e2: {_k: np.concatenate([e1[_k], e2[_k]], axis=0) for _k in e1},
points_list,
)
points = self._sieve_points(points, sieve, sign=-1, tol=1e-4)
return points
def _sieve_points(self, points, sieve, tol=1e-4, sign=1.):
def _sieve_points(self, points, sieve, tol=1e-4, sign=1.0):
sdf_fn = lambdify_np(self.sdf, points.keys())
points['sdf'] = sdf_fn(**points)
points["sdf"] = sdf_fn(**points)
criteria_fn = lambdify_np(True if sieve is None else sieve, points.keys())
criteria_index = np.logical_and(np.greater(points['sdf'], -tol), criteria_fn(**points))
criteria_index = np.logical_and(
np.greater(points["sdf"], -tol), criteria_fn(**points)
)
if sign == -1:
criteria_index = np.logical_and(np.less(points['sdf'], tol), criteria_index)
criteria_index = np.logical_and(np.less(points["sdf"], tol), criteria_index)
points = {k: v[criteria_index[:, 0], :] for k, v in points.items()}
return points
def sample_interior(self, density: int, bounds: Dict = None, sieve=None, param_ranges: Dict = None,
low_discrepancy=False) -> Dict[str, np.ndarray]:
def sample_interior(
self,
density: int,
bounds: Dict = None,
sieve=None,
param_ranges: Dict = None,
low_discrepancy=False,
) -> Dict[str, np.ndarray]:
bounds = self.bounds if bounds is None else bounds
bounds = {Symbol(key) if isinstance(key, str) else key: value for key, value in bounds.items()}
bounds = {
Symbol(key) if isinstance(key, str) else key: value
for key, value in bounds.items()
}
param_ranges = {} if param_ranges is None else param_ranges
measure = np.prod([value[1] - value[0] for value in bounds.values()])
nr_points = int(measure * density)
points = _ranged_sample(nr_points, {**bounds, **param_ranges}, low_discrepancy=low_discrepancy)
points = _ranged_sample(
nr_points, {**bounds, **param_ranges}, low_discrepancy=low_discrepancy
)
assert len(points.keys()) >= 0, "No points have been sampled!"
points = self._sieve_points(points, sieve, tol=0.)
points = self._sieve_points(points, sieve, tol=0.0)
points['area'] = np.zeros_like(points['sdf']) + (1.0 / density)
points["area"] = np.zeros_like(points["sdf"]) + (1.0 / density)
return points
def __add__(self, other: 'Geometry') -> 'Geometry':
def __add__(self, other: "Geometry") -> "Geometry":
geo = self.generate_geo_obj(other)
geo.edges = self.edges + other.edges
geo.sdf = WrapMax(self.sdf, other.sdf)
geo.bounds = dict()
for key, value in self.bounds.items():
geo.bounds[key] = (
min(other.bounds[key][0], self.bounds[key][0]), max(other.bounds[key][1], self.bounds[key][1]))
min(other.bounds[key][0], self.bounds[key][0]),
max(other.bounds[key][1], self.bounds[key][1]),
)
return geo
def generate_geo_obj(self, other=None):
@ -219,7 +269,7 @@ class Geometry(AbsGeoObj, metaclass=AbsCheckMix):
raise TypeError
return geo
def __sub__(self, other: 'Geometry') -> 'Geometry':
def __sub__(self, other: "Geometry") -> "Geometry":
geo = self.generate_geo_obj(other)
geo.edges = self.edges + [_inverse_edge(edge) for edge in other.edges]
@ -229,22 +279,24 @@ class Geometry(AbsGeoObj, metaclass=AbsCheckMix):
geo.bounds[key] = (self.bounds[key][0], self.bounds[key][1])
return geo
def __invert__(self) -> 'Geometry':
def __invert__(self) -> "Geometry":
geo = self.generate_geo_obj()
geo.edges = [_inverse_edge(edge) for edge in self.edges]
geo.sdf = WrapMul(-1, self.sdf)
for key, value in self.bounds.items():
geo.bounds[key] = (-float('inf'), float('inf'))
geo.bounds[key] = (-float("inf"), float("inf"))
return geo
def __and__(self, other: 'Geometry') -> 'Geometry':
def __and__(self, other: "Geometry") -> "Geometry":
geo = self.generate_geo_obj(other)
geo.edges = self.edges + other.edges
geo.sdf = WrapMin(self.sdf, other.sdf)
geo.bounds = dict()
for key, value in self.bounds.items():
geo.bounds[key] = (
max(other.bounds[key][0], self.bounds[key][0]), min(other.bounds[key][1], self.bounds[key][1]))
max(other.bounds[key][0], self.bounds[key][0]),
min(other.bounds[key][1], self.bounds[key][1]),
)
return geo
@ -261,14 +313,16 @@ class Geometry3D(Geometry):
# todo: sample in cuda device
def _ranged_sample(batch_size: int, ranges: Dict, low_discrepancy: bool = False) -> Dict[str, np.ndarray]:
def _ranged_sample(
batch_size: int, ranges: Dict, low_discrepancy: bool = False
) -> Dict[str, np.ndarray]:
points = dict()
low_discrepancy_stack = []
for key, value in ranges.items():
if isinstance(value, (float, int)):
samples = np.ones((batch_size, 1)) * value
elif isinstance(value, tuple):
assert len(value) == 2, 'Tuple: length of range should be 2!'
assert len(value) == 2, "Tuple: length of range should be 2!"
if low_discrepancy:
low_discrepancy_stack.append((key.name, value))
continue
@ -277,10 +331,12 @@ def _ranged_sample(batch_size: int, ranges: Dict, low_discrepancy: bool = False)
elif isinstance(value, collections.Callable):
samples = value(batch_size)
else:
raise TypeError(f'range type {type(value)} not supported!')
raise TypeError(f"range type {type(value)} not supported!")
points[key.name] = samples
if low_discrepancy:
low_discrepancy_points_dict = _low_discrepancy_sampling(batch_size, low_discrepancy_stack)
low_discrepancy_points_dict = _low_discrepancy_sampling(
batch_size, low_discrepancy_stack
)
points.update(low_discrepancy_points_dict)
for key, v in points.items():
points[key] = v.astype(np.float64)
@ -289,8 +345,8 @@ def _ranged_sample(batch_size: int, ranges: Dict, low_discrepancy: bool = False)
def _rotate_rec(x: Tuple, y: Tuple, angle: float):
points = itertools.product(x, y)
min_x, min_y = float('inf'), float('inf')
max_x, max_y = -float('inf'), -float('inf')
min_x, min_y = float("inf"), float("inf")
max_x, max_y = -float("inf"), -float("inf")
try:
for x, y in points:
new_x = cos(angle) * x - sin(angle) * y
@ -327,7 +383,11 @@ def _low_discrepancy_sampling(n_points, low_discrepancy_stack: List[Tuple]):
for i in range(len(q) - 1):
for j in range(dims):
x[q[i]:q[i + 1], j] = (x[q[i]:q[i + 1], j] - rmin[j]) / 2 + rmin[j] + ((i >> j) & 1) * bi_range
x[q[i] : q[i + 1], j] = (
(x[q[i] : q[i + 1], j] - rmin[j]) / 2
+ rmin[j]
+ ((i >> j) & 1) * bi_range
)
rmin_sub = [v + bi_range * ((i >> j) & 1) for j, v in enumerate(rmin)]
uniform(x, q[i], q[i + 1], rmin_sub, bi_range=bi_range / 2)
return x
@ -337,11 +397,15 @@ def _low_discrepancy_sampling(n_points, low_discrepancy_stack: List[Tuple]):
uniform(points, start=0, end=n, rmin=[0] * dim)
points_dict = {}
for i, (key, bi_range) in enumerate(low_discrepancy_stack):
points_dict[key] = points[:, i:i + 1] * (bi_range[1] - bi_range[0]) + bi_range[0]
points_dict[key] = (
points[:, i : i + 1] * (bi_range[1] - bi_range[0]) + bi_range[0]
)
return points_dict
def _inverse_edge(edge: Edge):
new_functions = {k: -v if k.startswith('normal_') else v for k, v in edge.functions.items()}
new_functions = {
k: -v if k.startswith("normal_") else v for k, v in edge.functions.items()
}
edge = Edge(functions=new_functions, ranges=edge.ranges, area=edge.area)
return edge

849
idrlnet/geo_utils/geo_obj.py
View File

File diff suppressed because it is too large Load Diff

44
idrlnet/optim.py
View File

@ -6,7 +6,7 @@ import inspect
import math
from typing import Dict
__all__ = ['get_available_class', 'Optimizable']
__all__ = ["get_available_class", "Optimizable"]
def get_available_class(module, class_name) -> Dict[str, type]:
@ -19,20 +19,28 @@ def get_available_class(module, class_name) -> Dict[str, type]:
:return: A dict mapping from subclass.name to subclass
:rtype: Dict[str, type]
"""
return dict(filter(
lambda x: inspect.isclass(x[1])
and issubclass(x[1], class_name)
and (not x[1] == class_name),
inspect.getmembers(module)))
return dict(
filter(
lambda x: inspect.isclass(x[1])
and issubclass(x[1], class_name)
and (not x[1] == class_name),
inspect.getmembers(module),
)
)
class Optimizable(metaclass=abc.ABCMeta):
"""An abstract class for organizing optimization related configuration and operations.
The interface is implemented by solver.Solver
"""
OPTIMIZER_MAP = get_available_class(module=torch.optim, class_name=torch.optim.Optimizer)
SCHEDULE_MAP = get_available_class(module=torch.optim.lr_scheduler,
class_name=torch.optim.lr_scheduler._LRScheduler)
OPTIMIZER_MAP = get_available_class(
module=torch.optim, class_name=torch.optim.Optimizer
)
SCHEDULE_MAP = get_available_class(
module=torch.optim.lr_scheduler,
class_name=torch.optim.lr_scheduler._LRScheduler,
)
@property
def optimizers(self):
@ -60,23 +68,25 @@ class Optimizable(metaclass=abc.ABCMeta):
self.configure_optimizers()
def parse_optimizer(self, **kwargs):
default_config = dict(optimizer='Adam', lr=1e-3)
default_config.update(kwargs.get('opt_config', {}))
default_config = dict(optimizer="Adam", lr=1e-3)
default_config.update(kwargs.get("opt_config", {}))
self.optimizer_config = default_config
def parse_lr_schedule(self, **kwargs):
default_config = dict(scheduler='ExponentialLR', gamma=math.pow(0.95, 0.001), last_epoch=-1)
default_config.update(kwargs.get('schedule_config', {}))
default_config = dict(
scheduler="ExponentialLR", gamma=math.pow(0.95, 0.001), last_epoch=-1
)
default_config.update(kwargs.get("schedule_config", {}))
self.schedule_config = default_config
def __str__(self):
if 'optimizer_config' in self.__dict__:
if "optimizer_config" in self.__dict__:
opt_str = str(self.optimizer_config)
else:
opt_str = str('optimizer is empty...')
opt_str = str("optimizer is empty...")
if 'schedule_config' in self.__dict__:
if "schedule_config" in self.__dict__:
schedule_str = str(self.schedule_config)
else:
schedule_str = str('scheduler is empty...')
schedule_str = str("scheduler is empty...")
return "\n".join([opt_str, schedule_str])

159
idrlnet/pde_op/equations.py
View File

@ -5,7 +5,14 @@ from sympy import Function, Number, symbols
from idrlnet.pde import PdeNode
__all__ = ['DiffusionNode', 'NavierStokesNode', 'WaveNode', 'BurgersNode', 'SchrodingerNode', 'AllenCahnNode']
__all__ = [
"DiffusionNode",
"NavierStokesNode",
"WaveNode",
"BurgersNode",
"SchrodingerNode",
"AllenCahnNode",
]
def symbolize(s, input_variables=None):
@ -19,134 +26,172 @@ def symbolize(s, input_variables=None):
class DiffusionNode(PdeNode):
def __init__(self, T='T', D='D', Q=0, dim=3, time=True, **kwargs):
def __init__(self, T="T", D="D", Q=0, dim=3, time=True, **kwargs):
super().__init__(**kwargs)
self.T = T
x, y, z, t = symbols('x y z t')
input_variables = {'x': x, 'y': y, 'z': z, 't': t}
x, y, z, t = symbols("x y z t")
input_variables = {"x": x, "y": y, "z": z, "t": t}
assert type(T) == str, "T should be string"
T = symbolize(T, input_variables=input_variables)
D = symbolize(D, input_variables=input_variables)
Q = symbolize(Q, input_variables=input_variables)
self.equations = {'diffusion_' + self.T: -Q}
self.equations = {"diffusion_" + self.T: -Q}
if time:
self.equations['diffusion_' + self.T] += T.diff(t)
self.equations["diffusion_" + self.T] += T.diff(t)
coord = [x, y, z]
for i in range(dim):
s = coord[i]
self.equations['diffusion_' + self.T] -= (D * T.diff(s)).diff(s)
self.equations["diffusion_" + self.T] -= (D * T.diff(s)).diff(s)
self.make_nodes()
class NavierStokesNode(PdeNode):
def __init__(self, nu=0.1, rho=1., dim=2., time=False, **kwargs):
def __init__(self, nu=0.1, rho=1.0, dim=2.0, time=False, **kwargs):
super().__init__(**kwargs)
self.dim = dim
assert self.dim in [2, 3], "dim should be 2 or 3"
self.time = time
x, y, z, t = symbols('x y z t')
input_variables = {'x': x, 'y': y, 'z': z, 't': t}
x, y, z, t = symbols("x y z t")
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
u = symbolize('u', input_variables)
v = symbolize('v', input_variables)
w = symbolize('w', input_variables) if self.dim == 3 else Number(0)
p = symbolize('p', input_variables)
u = symbolize("u", input_variables)
v = symbolize("v", input_variables)
w = symbolize("w", input_variables) if self.dim == 3 else Number(0)
p = symbolize("p", input_variables)
nu = symbolize(nu, input_variables)
rho = symbolize(rho, input_variables)
mu = rho * nu
self.equations = {'continuity': rho.diff(t) + (rho * u).diff(x) + (rho * v).diff(y) + (rho * w).diff(z),
'momentum_x': ((rho * u).diff(t)
+ (u * ((rho * u).diff(x)) + v * ((rho * u).diff(y)) + w * ((rho * u).diff(z)))
+ p.diff(x)
- (mu * u.diff(x)).diff(x)
- (mu * u.diff(y)).diff(y)
- (mu * u.diff(z)).diff(z)),
'momentum_y': ((rho * v).diff(t)
+ (u * ((rho * v).diff(x)) + v * ((rho * v).diff(y)) + w * ((rho * v).diff(z)))
+ p.diff(y)
- (mu * v.diff(x)).diff(x)
- (mu * v.diff(y)).diff(y)
- (mu * v.diff(z)).diff(z)), }
self.equations = {
"continuity": rho.diff(t)
+ (rho * u).diff(x)
+ (rho * v).diff(y)
+ (rho * w).diff(z),
"momentum_x": (
(rho * u).diff(t)
+ (
u * ((rho * u).diff(x))
+ v * ((rho * u).diff(y))
+ w * ((rho * u).diff(z))
)
+ p.diff(x)
- (mu * u.diff(x)).diff(x)
- (mu * u.diff(y)).diff(y)
- (mu * u.diff(z)).diff(z)
),
"momentum_y": (
(rho * v).diff(t)
+ (
u * ((rho * v).diff(x))
+ v * ((rho * v).diff(y))
+ w * ((rho * v).diff(z))
)
+ p.diff(y)
- (mu * v.diff(x)).diff(x)
- (mu * v.diff(y)).diff(y)
- (mu * v.diff(z)).diff(z)
),
}
if self.dim == 3:
self.equations['momentum_z'] = ((rho * w).diff(t)
+ (u * ((rho * w).diff(x)) + v * ((rho * w).diff(y)) + w * (
(rho * w).diff(z))) + p.diff(z) - (mu * w.diff(x)).diff(x) - (mu * w.diff(y)).diff(y) - (
mu * w.diff(z)).diff(z))
self.equations["momentum_z"] = (
(rho * w).diff(t)
+ (
u * ((rho * w).diff(x))
+ v * ((rho * w).diff(y))
+ w * ((rho * w).diff(z))
)
+ p.diff(z)
- (mu * w.diff(x)).diff(x)
- (mu * w.diff(y)).diff(y)
- (mu * w.diff(z)).diff(z)
)
self.make_nodes()
class WaveNode(PdeNode):
def __init__(self, u='u', c='c', dim=3, time=True, **kwargs):
def __init__(self, u="u", c="c", dim=3, time=True, **kwargs):
super().__init__(**kwargs)
self.u = u
self.dim = dim
self.time = time
x, y, z, t = symbols('x y z t')
input_variables = {'x': x, 'y': y, 'z': z, 't': t}
x, y, z, t = symbols("x y z t")
input_variables = {"x": x, "y": y, "z": z, "t": t}
assert self.dim in [1, 2, 3], "dim should be 1, 2 or 3."
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
assert type(u) == str, "u should be string"
u = symbolize(u, input_variables)
c = symbolize(c, input_variables)
self.equations = {'wave_equation': (u.diff(t, 2)
- (c ** 2 * u.diff(x)).diff(x)
- (c ** 2 * u.diff(y)).diff(y)
- (c ** 2 * u.diff(z)).diff(z))}
self.equations = {
"wave_equation": (
u.diff(t, 2)
- (c ** 2 * u.diff(x)).diff(x)
- (c ** 2 * u.diff(y)).diff(y)
- (c ** 2 * u.diff(z)).diff(z)
)
}
self.make_nodes()
class BurgersNode(PdeNode):
def __init__(self, u: str = 'u', v='v'):
def __init__(self, u: str = "u", v="v"):
super().__init__()
x, t = symbols('x t')
input_variables = {'x': x, 't': t}
x, t = symbols("x t")
input_variables = {"x": x, "t": t}
assert type(u) == str, "u needs to be string"
u = symbolize(u, input_variables)
v = symbolize(v, input_variables)
self.equations = {f'burgers_{str(u)}': (u.diff(t) + u * u.diff(x) - v * (u.diff(x)).diff(x))}
self.equations = {
f"burgers_{str(u)}": (u.diff(t) + u * u.diff(x) - v * (u.diff(x)).diff(x))
}
self.make_nodes()
class SchrodingerNode(PdeNode):
def __init__(self, u='u', v='v', c=0.5):
def __init__(self, u="u", v="v", c=0.5):
super().__init__()
self.c = c
x, t = symbols('x t')
input_variables = {'x': x, 't': t}
x, t = symbols("x t")
input_variables = {"x": x, "t": t}
assert type(u) == str, "u should be string"
u = symbolize(u, input_variables)
assert type(v) == str, "v should be string"
v = symbolize(v, input_variables)
self.equations = {'real': u.diff(t) + self.c * v.diff(x, 2) + (u ** 2 + v ** 2) * v,
'imaginary': v.diff(t) - self.c * u.diff(x, 2) - (u ** 2 + v ** 2) * u}
self.equations = {
"real": u.diff(t) + self.c * v.diff(x, 2) + (u ** 2 + v ** 2) * v,
"imaginary": v.diff(t) - self.c * u.diff(x, 2) - (u ** 2 + v ** 2) * u,
}
self.make_nodes()
class AllenCahnNode(PdeNode):
def __init__(self, u='u', gamma_1=0.0001, gamma_2=5):
def __init__(self, u="u", gamma_1=0.0001, gamma_2=5):
super().__init__()
self.gama_1 = gamma_1
self.gama_2 = gamma_2
x, t = symbols('x t')
input_variables = {'x': x, 't': t}
x, t = symbols("x t")
input_variables = {"x": x, "t": t}
assert type(u) == str, "u should be string"
u = symbolize(u, input_variables)
self.equations = {'AllenCahn_' + str(u): u.diff(t) - self.gama_1 * u.diff(x, 2) - self.gama_2 * (u - u ** 3)}
self.equations = {
"AllenCahn_"
+ str(u): u.diff(t)
- self.gama_1 * u.diff(x, 2)
- self.gama_2 * (u - u ** 3)
}
self.make_nodes()

231
idrlnet/pde_op/operator.py
View File

@ -11,7 +11,16 @@ from typing import Union, List
from idrlnet.torch_util import integral, _replace_derivatives, torch_lambdify
from idrlnet.variable import Variables
__all__ = ['NormalGradient', 'Difference', 'Derivative', 'Curl', 'Divergence', 'ICNode', 'Int1DNode', 'IntEq']
__all__ = [
"NormalGradient",
"Difference",
"Derivative",
"Curl",
"Divergence",
"ICNode",
"Int1DNode",
"IntEq",
]
class NormalGradient(PdeNode):
@ -21,48 +30,53 @@ class NormalGradient(PdeNode):
self.dim = dim
self.time = time
x, y, z, normal_x, normal_y, normal_z, t = symbols('x y z normal_x normal_y normal_z t')
x, y, z, normal_x, normal_y, normal_z, t = symbols(
"x y z normal_x normal_y normal_z t"
)
input_variables = {'x': x,
'y': y,
'z': z,
't': t}
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
T = Function(T)(*input_variables)
self.equations = {'normal_gradient_' + self.T: (normal_x * T.diff(x)
+ normal_y * T.diff(y)
+ normal_z * T.diff(z))}
self.equations = {
"normal_gradient_"
+ self.T: (
normal_x * T.diff(x) + normal_y * T.diff(y) + normal_z * T.diff(z)
)
}
self.make_nodes()
class Difference(PdeNode):
def __init__(self, T: Union[str, Symbol, float, int], S: Union[str, Symbol, float, int], dim=3, time=True):
def __init__(
self,
T: Union[str, Symbol, float, int],
S: Union[str, Symbol, float, int],
dim=3,
time=True,
):
super().__init__()
self.T = T
self.S = S
self.dim = dim
self.time = time
x, y, z = symbols('x y z')
t = Symbol('t')
input_variables = {'x': x,
'y': y,
'z': z,
't': t}
x, y, z = symbols("x y z")
t = Symbol("t")
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
# variables to set the gradients (example Temperature)
T = Function(T)(*input_variables)
@ -70,32 +84,35 @@ class Difference(PdeNode):
# set equations
self.equations = {}
self.equations['difference_' + self.T + '_' + self.S] = T - S
self.equations["difference_" + self.T + "_" + self.S] = T - S
self.make_nodes()
class Derivative(PdeNode):
def __init__(self, T: Union[str, Symbol, float, int], p: Union[str, Symbol], S: Union[str, Symbol, float, int] = 0.,
dim=3, time=True):
def __init__(
self,
T: Union[str, Symbol, float, int],
p: Union[str, Symbol],
S: Union[str, Symbol, float, int] = 0.0,
dim=3,
time=True,
):
super().__init__()
self.T = T
self.S = S
self.dim = dim
self.time = time
x, y, z = symbols('x y z')
t = Symbol('t')
x, y, z = symbols("x y z")
t = Symbol("t")
input_variables = {'x': x,
'y': y,
'z': z,
't': t}
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
if type(S) is str:
S = Function(S)(*input_variables)
elif type(S) in [float, int]:
@ -105,9 +122,11 @@ class Derivative(PdeNode):
T = Function(T)(*input_variables)
self.equations = {}
if isinstance(S, Function):
self.equations['derivative_' + self.T + ':' + str(p) + '_' + str(self.S)] = T.diff(p) - S
self.equations[
"derivative_" + self.T + ":" + str(p) + "_" + str(self.S)
] = (T.diff(p) - S)
else:
self.equations['derivative_' + self.T + ':' + str(p)] = T.diff(p) - S
self.equations["derivative_" + self.T + ":" + str(p)] = T.diff(p) - S
self.make_nodes()
@ -115,9 +134,9 @@ class Curl(PdeNode):
def __init__(self, vector, curl_name=None):
super().__init__()
if curl_name is None:
curl_name = ['u', 'v', 'w']
x, y, z = symbols('x y z')
input_variables = {'x': x, 'y': y, 'z': z}
curl_name = ["u", "v", "w"]
x, y, z = symbols("x y z")
input_variables = {"x": x, "y": y, "z": z}
v_0 = vector[0]
v_1 = vector[1]
@ -146,11 +165,11 @@ class Curl(PdeNode):
class Divergence(PdeNode):
def __init__(self, vector, div_name='div_v'):
def __init__(self, vector, div_name="div_v"):
super().__init__()
x, y, z = symbols('x y z')
x, y, z = symbols("x y z")
input_variables = {'x': x, 'y': y, 'z': z}
input_variables = {"x": x, "y": y, "z": z}
v_0 = vector[0]
v_1 = vector[1]
@ -174,9 +193,13 @@ class Divergence(PdeNode):
class ICNode(PdeNode):
def __init__(self, T: Union[str, Symbol, int, float, List[Union[str, Symbol, int, float]]], dim: int = 2,
time: bool = False,
reduce_name: str = None):
def __init__(
self,
T: Union[str, Symbol, int, float, List[Union[str, Symbol, int, float]]],
dim: int = 2,
time: bool = False,
reduce_name: str = None,
):
super().__init__()
if reduce_name is None:
reduce_name = str(T)
@ -185,28 +208,26 @@ class ICNode(PdeNode):
self.time = time
self.reduce_name = reduce_name
x, y, z = symbols('x y z')
normal_x = Symbol('normal_x')
normal_y = Symbol('normal_y')
normal_z = Symbol('normal_z')
area = Symbol('area')
x, y, z = symbols("x y z")
normal_x = Symbol("normal_x")
normal_y = Symbol("normal_y")
normal_z = Symbol("normal_z")
area = Symbol("area")
t = Symbol('t')
t = Symbol("t")
input_variables = {'x': x,
'y': y,
'z': z,
't': t}
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
def sympify_T(T: Union[str, Symbol, int, float, List[Union[str, Symbol, int, float]]]) -> Union[
Symbol, List[Symbol]]:
def sympify_T(
T: Union[str, Symbol, int, float, List[Union[str, Symbol, int, float]]]
) -> Union[Symbol, List[Symbol]]:
if isinstance(T, list):
return [sympify_T(_T) for _T in T]
elif type(T) is str:
@ -220,23 +241,33 @@ class ICNode(PdeNode):
self.equations = {}
if isinstance(T, list):
if self.dim == 3:
self.equations['integral_' + self.reduce_name] = integral((normal_x * T[0]
+ normal_y * T[1]
+ normal_z * T[2]) * area)
self.equations["integral_" + self.reduce_name] = integral(
(normal_x * T[0] + normal_y * T[1] + normal_z * T[2]) * area
)
if self.dim == 2:
self.equations['integral_' + self.reduce_name] = integral((normal_x * T[0]
+ normal_y * T[1]) * area)
self.equations["integral_" + self.reduce_name] = integral(
(normal_x * T[0] + normal_y * T[1]) * area
)
else:
self.equations['integral_' + self.reduce_name] = integral(T * area)
self.equations["integral_" + self.reduce_name] = integral(T * area)
self.make_nodes()
class Int1DNode(PdeNode):
counter = 0
def __init__(self, expression, expression_name, lb, ub, var: Union[str, sp.Symbol] = 's', degree=20, **kwargs):
def __init__(
self,
expression,
expression_name,
lb,
ub,
var: Union[str, sp.Symbol] = "s",
degree=20,
**kwargs
):
super().__init__(**kwargs)
x = sp.Symbol('x')
x = sp.Symbol("x")
self.equations = {}
self.var = sp.Symbol(var) if isinstance(var, str) else var
self.degree = degree
@ -265,13 +296,19 @@ class Int1DNode(PdeNode):
else:
raise
if 'funs' in kwargs.keys():
self.funs = kwargs['funs']
if "funs" in kwargs.keys():
self.funs = kwargs["funs"]
else:
self.funs = {}
self.computable_name = set(*[fun['output_map'].values() for _, fun in self.funs.items()])
self.computable_name = set(
*[fun["output_map"].values() for _, fun in self.funs.items()]
)
self.fun_require_input = set(
*[set(fun['eval'].inputs) - set(fun['input_map'].keys()) for _, fun in self.funs.items()])
*[
set(fun["eval"].inputs) - set(fun["input_map"].keys())
for _, fun in self.funs.items()
]
)
self.make_nodes()
@ -300,13 +337,22 @@ class Int1DNode(PdeNode):
self.derivatives = []
self.outputs = [x for x in name_set]
def new_node(self, name: str = None, tf_eq: sp.Expr = None, free_symbols: List[str] = None, *args, **kwargs):
def new_node(
self,
name: str = None,
tf_eq: sp.Expr = None,
free_symbols: List[str] = None,
*args,
**kwargs
):
out_symbols = [x for x in free_symbols if x not in self.funs.keys()]
lb_lambda = torch_lambdify(out_symbols, self.lb)
ub_lambda = torch_lambdify(out_symbols, self.ub)
eq_lambda = torch_lambdify([*free_symbols, self.var.name], tf_eq)
node = Node()
node.evaluate = IntEq(self, lb_lambda, ub_lambda, out_symbols, free_symbols, eq_lambda, name)
node.evaluate = IntEq(
self, lb_lambda, ub_lambda, out_symbols, free_symbols, eq_lambda, name
)
node.inputs = [x for x in free_symbols if x not in self.funs.keys()]
node.derivatives = []
node.outputs = [name]
@ -315,7 +361,16 @@ class Int1DNode(PdeNode):
class IntEq:
def __init__(self, binding_node, lb_lambda, ub_lambda, out_symbols, free_symbols, eq_lambda, name):
def __init__(
self,
binding_node,
lb_lambda,
ub_lambda,
out_symbols,
free_symbols,
eq_lambda,
name,
):
self.binding_node = binding_node
self.lb_lambda = lb_lambda
self.ub_lambda = ub_lambda
@ -326,8 +381,12 @@ class IntEq:
def __call__(self, var: Variables):
var = {k: v for k, v in var.items()}
lb_value = self.lb_lambda(**{k: v for k, v in var.items() if k in self.out_symbols})
ub_value = self.ub_lambda(**{k: v for k, v in var.items() if k in self.out_symbols})
lb_value = self.lb_lambda(
**{k: v for k, v in var.items() if k in self.out_symbols}
)
ub_value = self.ub_lambda(
**{k: v for k, v in var.items() if k in self.out_symbols}
)
xx = dict()
for syp in self.free_symbols:
@ -347,19 +406,21 @@ class IntEq:
new_var = dict()
for _, fun in self.binding_node.funs.items():
input_map = fun['input_map']
output_map = fun['output_map']
input_map = fun["input_map"]
output_map = fun["output_map"]
tmp_var = dict()
for k, v in xx.items():
tmp_var[k] = v
for k, v in input_map.items():
tmp_var[k] = quad_s
res = fun['eval'].evaluate(tmp_var)
res = fun["eval"].evaluate(tmp_var)
for k, v in output_map.items():
res[v] = res.pop(k)
new_var.update(res)
xx.update(new_var)
values = quad_w * self.eq_lambda(**dict(**{self.binding_node.var.name: quad_s}, **xx))
values = quad_w * self.eq_lambda(
**dict(**{self.binding_node.var.name: quad_s}, **xx)
)
values = values.reshape(shape)
return {self.name: values.sum(1, keepdim=True)}

2
setup.py
View File

@ -19,4 +19,4 @@ setuptools.setup(
"Operating System :: OS Independent",
],
python_requires='>=3.6',
)
)