Merge pull request #62 from nlesc-dirac/fix_das5
fix the build system for das5 and improve continuous integration
This commit is contained in:
Sarod Yatawatta
GitHub
commit
0a2165d1bf
15
.travis.yml
15
.travis.yml
|
|
@ -6,20 +6,17 @@ language: cpp
|
|||
#env:
|
||||
|
||||
before_install:
|
||||
- docker pull ubuntu:xenial
|
||||
- docker run -itd -v "${TRAVIS_BUILD_DIR}:/travis/workdir" --name ubuntu-build ubuntu:xenial
|
||||
- docker pull fdiblen/ubuntu1604-test:latest
|
||||
- docker run -itd -v "${TRAVIS_BUILD_DIR}:/travis/workdir" --name ubuntu-build fdiblen/ubuntu1604-test:latest
|
||||
- docker pull fdiblen/sl7-test:latest
|
||||
- docker run -itd -v "${TRAVIS_BUILD_DIR}:/travis/workdir" --name sl-build fdiblen/sl7-test:latest
|
||||
# - docker pull base/archlinux
|
||||
# - docker run -itd -v "${TRAVIS_BUILD_DIR}:/travis/workdir" --name arch-build base/archlinux
|
||||
# - docker pull scientificlinux/sl:7
|
||||
# - docker run -itd -v "${TRAVIS_BUILD_DIR}:/travis/workdir" --name sl-build scientificlinux/sl:7
|
||||
|
||||
script:
|
||||
- export BRANCH=$(if [ "$TRAVIS_PULL_REQUEST" == "false" ]; then echo $TRAVIS_BRANCH; else echo $TRAVIS_PULL_REQUEST_BRANCH; fi)
|
||||
- echo "TRAVIS_BRANCH=$TRAVIS_BRANCH, PR=$PR, BRANCH=$BRANCH"
|
||||
- docker exec --env BRANCH=$BRANCH ubuntu-build /bin/bash -c "/travis/workdir/build-tests/ubuntu/prepare-ubuntu.sh"
|
||||
- docker exec --env BRANCH=$BRANCH ubuntu-build /bin/bash -c "/travis/workdir/build-tests/ubuntu/compile-ubuntu.sh"
|
||||
- docker exec -e BRANCH=$BRANCH -e IMAGE='ubuntu' ubuntu-build /bin/bash -c "/travis/workdir/build-tests/compile_sagecal.sh"
|
||||
- docker exec -e BRANCH=$BRANCH -e IMAGE='sl7' sl-build /bin/bash -c "/travis/workdir/build-tests/compile_sagecal.sh"
|
||||
# - docker exec --env BRANCH=$BRANCH arch-build /bin/bash -c "/travis/workdir/build-tests/arch/prepare-arch.sh"
|
||||
# - docker exec --env BRANCH=$BRANCH arch-build /bin/bash -c "/travis/workdir/build-tests/arch/compile-arch.sh"
|
||||
# - docker exec --env BRANCH=$BRANCH sl-build /bin/bash -c "/travis/workdir/build-tests/sl/prepare-sl.sh"
|
||||
# - docker exec --env BRANCH=$BRANCH sl-build /bin/bash -c "/travis/workdir/build-tests/sl/compile-sl.sh"
|
||||
|
||||
|
|
|
|||
|
|
@ -50,14 +50,15 @@ IF("${isSystemDir}" STREQUAL "-1")
|
|||
SET(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
|
||||
ENDIF("${isSystemDir}" STREQUAL "-1")
|
||||
|
||||
# libsynthesis has mix of C++ and Fortran which is not handled well by
|
||||
# versions before 2.8.
|
||||
if(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} LESS 2.8)
|
||||
if(NOT LIB_EXTRA_SYNTHESIS)
|
||||
set(LIB_EXTRA_SYNTHESIS gfortran)
|
||||
endif(NOT LIB_EXTRA_SYNTHESIS)
|
||||
endif(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} LESS 2.8)
|
||||
|
||||
# # libsynthesis has mix of C++ and Fortran which is not handled well by
|
||||
# # versions before 2.8.
|
||||
# if(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} LESS 2.8)
|
||||
# if(NOT LIB_EXTRA_SYNTHESIS)
|
||||
# set(LIB_EXTRA_SYNTHESIS gfortran)
|
||||
# endif(NOT LIB_EXTRA_SYNTHESIS)
|
||||
# endif(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} LESS 2.8)
|
||||
#
|
||||
|
||||
|
||||
#--------------------------------------- SageCal dependencies
|
||||
|
|
@ -73,7 +74,7 @@ include_directories(${CASACORE_INCLUDE_DIR})
|
|||
|
||||
#cfitsio
|
||||
find_package(CfitsIO REQUIRED)
|
||||
include_directories(${CFITSIO_INCLUDE_DIR})
|
||||
include_directories(${CFITSIO_INCLUDE})
|
||||
|
||||
#lapack
|
||||
find_package(LAPACK REQUIRED)
|
||||
|
|
@ -91,10 +92,21 @@ include_directories(${OpenBLAS_INCLUDE_DIR})
|
|||
#find_package(BLAS REQUIRED)
|
||||
#include_directories(${BLAS_INCLUDE_DIR})
|
||||
|
||||
# FIXME: is this really needed?
|
||||
##gfortran
|
||||
# ##gfortran
|
||||
enable_language(Fortran)
|
||||
#find_package(GFortranLibs REQUIRED)
|
||||
#include_directories(${GFORTRAN_INCLUDE_DIR})
|
||||
# include_directories(${GFORTRAN_INCLUDE_DIR})
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# enable_language(Fortran)
|
||||
# # get_filename_component (Fortran_COMPILER_NAME ${CMAKE_Fortran_COMPILER} NAME)
|
||||
# set(FC "$ENV{FC}" CACHE INTERNAL "Got from environment variable")
|
||||
# set(CMAKE_Fortran_COMPILER "$ENV{FC}" CACHE INTERNAL "Got from environment variable")
|
||||
#
|
||||
|
||||
|
||||
##hdf5
|
||||
#find_package(HDF5 REQUIRED)
|
||||
|
|
@ -134,6 +146,7 @@ set (CMAKE_CXX_FLAGS "-std=c++0x -g -O3 -Wall")
|
|||
#--------------------------------------- summary
|
||||
message(STATUS "\n############################\n# Configuration summary\n############################")
|
||||
message (STATUS "CMAKE_SYSTEM .......... = ${CMAKE_SYSTEM}")
|
||||
message (STATUS "CMAKE_INSTALL_PREFIX .. = ${CMAKE_INSTALL_PREFIX}")
|
||||
message (STATUS "CMAKE_BUILD_TYPE ...... = ${CMAKE_BUILD_TYPE}")
|
||||
message (STATUS "BUILD_SHARED_LIBS ..... = ${BUILD_SHARED_LIBS}")
|
||||
message (STATUS "CMAKE_INSTALL_NAME_DIR = ${CMAKE_INSTALL_NAME_DIR}")
|
||||
|
|
@ -144,30 +157,36 @@ message (STATUS "CMAKE_CXX_FLAGS ....... = ${CMAKE_CXX_FLAGS}")
|
|||
message (STATUS "ENABLE_MPI ............ = ${ENABLE_MPI}")
|
||||
message (STATUS "ENABLE_CUDA ........... = ${ENABLE_CUDA}")
|
||||
|
||||
message (STATUS "CASACORE_INCLUDE_DIR........... = ${CASACORE_INCLUDE_DIR}")
|
||||
message (STATUS "CASACORE_LIBRARIES........... = ${CASACORE_LIBRARIES}")
|
||||
message (STATUS "CASACORE_INCLUDE_DIR....= ${CASACORE_INCLUDE_DIR}")
|
||||
message (STATUS "CASACORE_LIBRARIES......= ${CASACORE_LIBRARIES}")
|
||||
|
||||
message (STATUS "OpenBLAS_LIB .......... = ${OpenBLAS_LIB}")
|
||||
|
||||
message (STATUS "GLIB_PKG_INCLUDE_DIRS.............. = ${GLIB_PKG_INCLUDE_DIRS}")
|
||||
message (STATUS "GLIB_PKG_LIBRARIES............. = ${GLIB_PKG_LIBRARIES}")
|
||||
message (STATUS "GLIB_PKG_INCLUDE_DIRS...= ${GLIB_PKG_INCLUDE_DIRS}")
|
||||
message (STATUS "GLIB_PKG_LIBRARIES......= ${GLIB_PKG_LIBRARIES}")
|
||||
|
||||
#message (STATUS "LAPACK-INC ............ = ${LAPACK_INCLUDE_DIR}")
|
||||
message (STATUS "LAPACK_LIBRARIES........... = ${LAPACK_LIBRARIES}")
|
||||
message (STATUS "LAPACK_LIBRARIES........= ${LAPACK_LIBRARIES}")
|
||||
|
||||
#message (STATUS "GFORTRAN-INC ......... = ${GFORTRAN_INCLUDE_DIR}")
|
||||
#message (STATUS "GFORTRAN-LIBS ......... = ${LIBGFORTRAN_LIBRARIES}")
|
||||
# message (STATUS "GFORTRAN-INC ......... = ${GFORTRAN_INCLUDE_DIR}")
|
||||
# message (STATUS "GFORTRAN-LIBS ......... = ${LIBGFORTRAN_LIBRARIES}")
|
||||
message (STATUS "CMAKE_Fortran_COMPILER = ${CMAKE_Fortran_COMPILER}")
|
||||
|
||||
message (STATUS "CFITSIO_INCLUDE_DIR.......... = ${CFITSIO_INCLUDE_DIR}")
|
||||
message (STATUS "CFITSIO_LIBRARIES.......... = ${CFITSIO_LIBRARIES}")
|
||||
message (STATUS "CFITSIO_ROOT_DIR........= ${CFITSIO_ROOT_DIR}")
|
||||
message (STATUS "CFITSIO_INCLUDE.........= ${CFITSIO_INCLUDE}")
|
||||
message (STATUS "CFITSIO_LIB.............= ${CFITSIO_LIB}")
|
||||
|
||||
message (STATUS "WCSLIB_INCLUDE_DIR........... = ${WCSLIB_INCLUDE_DIR}")
|
||||
message (STATUS "WCSLIB_LIBRARIES ........... = ${WCSLIB_LIBRARIES}")
|
||||
message (STATUS "WCSLIB_INCLUDE_DIRS.....= ${WCSLIB_INCLUDE_DIRS}")
|
||||
message (STATUS "WCSLIB_LIBRARIES .......= ${WCSLIB_LIBRARIES}")
|
||||
|
||||
message (STATUS "HDF5_INCLUDE_DIR........... = ${HDF5_INCLUDE_DIRS}")
|
||||
message (STATUS "HDF5_LIBRARIES........... = ${HDF5_LIBRARIES}")
|
||||
message (STATUS "HDF5_INCLUDE_DIR........= ${HDF5_INCLUDE_DIRS}")
|
||||
message (STATUS "HDF5_LIBRARIES..........= ${HDF5_LIBRARIES}")
|
||||
|
||||
|
||||
message (STATUS "CMAKE_CURRENT_BINARY_DIR..........= ${CMAKE_CURRENT_BINARY_DIR}")
|
||||
message (STATUS "CMAKE_CURRENT_LIST_DIR..........= ${CMAKE_CURRENT_LIST_DIR}")
|
||||
message (STATUS "CMAKE_INSTALL_PREFIX..........= ${CMAKE_INSTALL_PREFIX}")
|
||||
|
||||
|
||||
#--------------------------------------- include directories
|
||||
add_subdirectory(src)
|
||||
|
|
@ -178,3 +197,5 @@ add_subdirectory(src)
|
|||
# FIXME: this will be the final step for testing
|
||||
#file(COPY ${PROJECT_SOURCE_DIR}/test DESTINATION ${MAINFOLDER}/dist/test)
|
||||
|
||||
|
||||
install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/dist/ DESTINATION ${CMAKE_INSTALL_PREFIX})
|
||||
|
|
|
|||
|
|
@ -71,7 +71,15 @@
|
|||
# directly fed to the linker.
|
||||
#
|
||||
# Usage: casacore_resolve_dependencies(result components...)
|
||||
#
|
||||
|
||||
|
||||
if (NOT "$ENV{CASACORE_ROOT_DIR}" STREQUAL "")
|
||||
set(CASACORE_ROOT_DIR "$ENV{CASACORE_ROOT_DIR}" CACHE INTERNAL "Got from environment variable")
|
||||
endif()
|
||||
|
||||
|
||||
|
||||
|
||||
macro(casacore_resolve_dependencies _result)
|
||||
set(${_result} ${ARGN})
|
||||
set(_index 0)
|
||||
|
|
|
|||
|
|
@ -3,11 +3,11 @@
|
|||
# CFITSIO_ROOT_DIR - CFITSIO root directory
|
||||
# Variables defined by this module:
|
||||
# CFITSIO_FOUND - system has CFITSIO
|
||||
# CFITSIO_INCLUDE_DIR - the CFITSIO include directory (cached)
|
||||
# CFITSIO_INCLUDE_DIRS - the CFITSIO include directories
|
||||
# (identical to CFITSIO_INCLUDE_DIR)
|
||||
# CFITSIO_INCLUDE - the CFITSIO include directory (cached)
|
||||
# CFITSIO_INCLUDES - the CFITSIO include directories
|
||||
# (identical to CFITSIO_INCLUDE)
|
||||
# CFITSIO_LIBRARY - the CFITSIO library (cached)
|
||||
# CFITSIO_LIBRARIES - the CFITSIO libraries
|
||||
# CFITSIO_LIB - the CFITSIO libraries
|
||||
# (identical to CFITSIO_LIBRARY)
|
||||
# CFITSIO_VERSION_STRING the found version of CFITSIO, padded to 3 digits
|
||||
|
||||
|
|
@ -33,12 +33,17 @@
|
|||
|
||||
if(NOT CFITSIO_FOUND)
|
||||
|
||||
find_path(CFITSIO_INCLUDE_DIR fitsio.h
|
||||
if (NOT "$ENV{CFITSIO_ROOT_DIR}" STREQUAL "")
|
||||
set(CFITSIO_ROOT_DIR "$ENV{CFITSIO_ROOT_DIR}" CACHE INTERNAL "Got from environment variable")
|
||||
endif()
|
||||
|
||||
|
||||
find_path(CFITSIO_INCLUDE fitsio.h
|
||||
HINTS ${CFITSIO_ROOT_DIR} PATH_SUFFIXES include include/cfitsio
|
||||
include/libcfitsio0)
|
||||
|
||||
if(CFITSIO_INCLUDE_DIR)
|
||||
FILE(READ "${CFITSIO_INCLUDE_DIR}/fitsio.h" CFITSIO_H)
|
||||
if(CFITSIO_INCLUDE)
|
||||
FILE(READ "${CFITSIO_INCLUDE}/fitsio.h" CFITSIO_H)
|
||||
set(CFITSIO_VERSION_REGEX ".*#define CFITSIO_VERSION[^0-9]*([0-9]+)\\.([0-9]+).*")
|
||||
if ("${CFITSIO_H}" MATCHES ${CFITSIO_VERSION_REGEX})
|
||||
# Pad CFITSIO minor version to three digit because 3.181 is older than 3.35
|
||||
|
|
@ -51,24 +56,24 @@ if(NOT CFITSIO_FOUND)
|
|||
else ()
|
||||
set(CFITSIO_VERSION_STRING "Unknown")
|
||||
endif()
|
||||
endif(CFITSIO_INCLUDE_DIR)
|
||||
endif(CFITSIO_INCLUDE)
|
||||
|
||||
find_library(CFITSIO_LIBRARY cfitsio
|
||||
HINTS ${CFITSIO_ROOT_DIR} PATH_SUFFIXES lib)
|
||||
find_library(M_LIBRARY m)
|
||||
mark_as_advanced(CFITSIO_INCLUDE_DIR CFITSIO_LIBRARY M_LIBRARY)
|
||||
mark_as_advanced(CFITSIO_INCLUDE CFITSIO_LIBRARY M_LIBRARY)
|
||||
|
||||
if(CMAKE_VERSION VERSION_LESS "2.8.3")
|
||||
find_package_handle_standard_args(CFITSIO DEFAULT_MSG
|
||||
CFITSIO_LIBRARY M_LIBRARY CFITSIO_INCLUDE_DIR)
|
||||
CFITSIO_LIBRARY M_LIBRARY CFITSIO_INCLUDE)
|
||||
else ()
|
||||
include(FindPackageHandleStandardArgs)
|
||||
find_package_handle_standard_args(CFITSIO
|
||||
REQUIRED_VARS CFITSIO_LIBRARY M_LIBRARY CFITSIO_INCLUDE_DIR
|
||||
REQUIRED_VARS CFITSIO_LIBRARY M_LIBRARY CFITSIO_INCLUDE
|
||||
VERSION_VAR CFITSIO_VERSION_STRING)
|
||||
endif ()
|
||||
|
||||
set(CFITSIO_INCLUDE_DIRS ${CFITSIO_INCLUDE_DIR})
|
||||
set(CFITSIO_LIBRARIES ${CFITSIO_LIBRARY} ${M_LIBRARY})
|
||||
set(CFITSIO_INCLUDES ${CFITSIO_INCLUDE})
|
||||
set(CFITSIO_LIB ${CFITSIO_LIBRARY} ${M_LIBRARY})
|
||||
|
||||
endif(NOT CFITSIO_FOUND)
|
||||
|
|
|
|||
|
|
@ -24,120 +24,128 @@ if(NOT CMAKE_REQUIRED_QUIET)
|
|||
message(STATUS "Looking for gfortran related libraries...")
|
||||
endif()
|
||||
|
||||
# enable_language(Fortran)
|
||||
# if(CMAKE_Fortran_COMPILER_ID MATCHES "GNU")
|
||||
#
|
||||
# # Basically, call "gfortran -v" to dump compiler info to the string
|
||||
# # GFORTRAN_VERBOSE_STR, which will be used to get necessary paths
|
||||
# message(STATUS "Extracting library and header information by calling 'gfortran -v'...")
|
||||
# execute_process(COMMAND "${CMAKE_Fortran_COMPILER}" "-v" ERROR_VARIABLE
|
||||
# GFORTRAN_VERBOSE_STR RESULT_VARIABLE FLAG)
|
||||
#
|
||||
# # For debugging
|
||||
# message(STATUS "'gfortran -v' returned:")
|
||||
# message(STATUS "${GFORTRAN_VERBOSE_STR}")
|
||||
#
|
||||
# # Detect gfortran version
|
||||
# string(REGEX MATCH "gcc version [^\t\n ]+" GFORTRAN_VER_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
# string(REGEX REPLACE "gcc version ([^\t\n ]+)" "\\1" GFORTRAN_VERSION_STRING "${GFORTRAN_VER_STR}")
|
||||
# message(STATUS "Detected gfortran version ${GFORTRAN_VERSION_STRING}")
|
||||
# unset(GFORTRAN_VER_STR)
|
||||
#
|
||||
# set(MATCH_REGEX "[^\t\n ]+[\t\n ]+")
|
||||
# set(REPLACE_REGEX "([^\t\n ]+)")
|
||||
#
|
||||
# # Find architecture for compiler
|
||||
# string(REGEX MATCH "Target: [^\t\n ]+"
|
||||
# GFORTRAN_ARCH_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
# message(STATUS "Architecture string: ${GFORTRAN_ARCH_STR}")
|
||||
# string(REGEX REPLACE "Target: ([^\t\n ]+)" "\\1"
|
||||
# GFORTRAN_ARCH "${GFORTRAN_ARCH_STR}")
|
||||
# message(STATUS "Detected gfortran architecture: ${GFORTRAN_ARCH}")
|
||||
# unset(GFORTRAN_ARCH_STR)
|
||||
#
|
||||
# # Find install prefix, if it exists; if not, use default
|
||||
# string(REGEX MATCH "--prefix=[^\t\n ]+[\t\n ]+"
|
||||
# GFORTRAN_PREFIX_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
# if(NOT GFORTRAN_PREFIX_STR)
|
||||
# message(STATUS "Detected default gfortran prefix")
|
||||
# set(GFORTRAN_PREFIX_DIR "/usr/local") # default prefix for gcc install
|
||||
# else()
|
||||
# string(REGEX REPLACE "--prefix=([^\t\n ]+)" "\\1"
|
||||
# GFORTRAN_PREFIX_DIR "${GFORTRAN_PREFIX_STR}")
|
||||
# endif()
|
||||
# message(STATUS "Detected gfortran prefix: ${GFORTRAN_PREFIX_DIR}")
|
||||
# unset(GFORTRAN_PREFIX_STR)
|
||||
#
|
||||
# # Find install exec-prefix, if it exists; if not, use default
|
||||
# string(REGEX MATCH "--exec-prefix=[^\t\n ]+[\t\n ]+" "\\1"
|
||||
# GFORTRAN_EXEC_PREFIX_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
# if(NOT GFORTRAN_EXEC_PREFIX_STR)
|
||||
# message(STATUS "Detected default gfortran exec-prefix")
|
||||
# set(GFORTRAN_EXEC_PREFIX_DIR "${GFORTRAN_PREFIX_DIR}")
|
||||
# else()
|
||||
# string(REGEX REPLACE "--exec-prefix=([^\t\n ]+)" "\\1"
|
||||
# GFORTRAN_EXEC_PREFIX_DIR "${GFORTRAN_EXEC_PREFIX_STR}")
|
||||
# endif()
|
||||
# message(STATUS "Detected gfortran exec-prefix: ${GFORTRAN_EXEC_PREFIX_DIR}")
|
||||
# UNSET(GFORTRAN_EXEC_PREFIX_STR)
|
||||
#
|
||||
# # Find library directory and include directory, if library directory specified
|
||||
# string(REGEX MATCH "--libdir=[^\t\n ]+"
|
||||
# GFORTRAN_LIB_DIR_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
# if(NOT GFORTRAN_LIB_DIR_STR)
|
||||
# message(STATUS "Found --libdir flag -- not found")
|
||||
# message(STATUS "Using default gfortran library & include directory paths")
|
||||
# set(GFORTRAN_LIBRARIES_DIR
|
||||
# "${GFORTRAN_EXEC_PREFIX_DIR}/lib/gcc/${GFORTRAN_ARCH}/${GFORTRAN_VERSION_STRING}")
|
||||
# string(CONCAT GFORTRAN_INCLUDE_DIR "${GFORTRAN_LIBRARIES_DIR}" "/include")
|
||||
# else()
|
||||
# message(STATUS "Found --libdir flag -- yes")
|
||||
# string(REGEX REPLACE "--libdir=([^\t\n ]+)" "\\1"
|
||||
# GFORTRAN_LIBRARIES_DIR "${GFORTRAN_LIB_DIR_STR}")
|
||||
# string(CONCAT GFORTRAN_INCLUDE_DIR "${GFORTRAN_LIBRARIES_DIR}" "/gcc/" "${GFORTRAN_ARCH}" "/" "${GFORTRAN_VERSION_STRING}" "/include")
|
||||
# endif()
|
||||
# message(STATUS "gfortran libraries path: ${GFORTRAN_LIBRARIES_DIR}")
|
||||
# message(STATUS "gfortran include path dir: ${GFORTRAN_INCLUDE_DIR}")
|
||||
# unset(GFORTRAN_LIB_DIR_STR)
|
||||
#
|
||||
# # There are lots of other build options for gcc & gfortran. For now, the
|
||||
# # options implemented above should cover a lot of common use cases.
|
||||
#
|
||||
# # Clean up be deleting the output string from "gfortran -v"
|
||||
# unset(GFORTRAN_VERBOSE_STR)
|
||||
#
|
||||
# # Find paths for libgfortran, libquadmath, libgomp
|
||||
# # libgomp needed for OpenMP support without Clang
|
||||
# find_library(LIBGFORTRAN_LIBRARIES NAMES gfortran libgfortran
|
||||
# HINTS ${GFORTRAN_LIBRARIES_DIR})
|
||||
# find_library(LIBQUADMATH_LIBRARIES NAMES quadmath libquadmath
|
||||
# HINTS ${GFORTRAN_LIBRARIES_DIR})
|
||||
# find_library(LIBGOMP_LIBRARIES NAMES gomp libgomp
|
||||
# HINTS ${GFORTRAN_LIBRARIES_DIR})
|
||||
#
|
||||
# # Find OpenMP headers
|
||||
# find_path(LIBGOMP_INCLUDE_DIR NAMES omp.h HINTS ${GFORTRAN_INCLUDE_DIR})
|
||||
#
|
||||
# else()
|
||||
# message(STATUS "CMAKE_Fortran_COMPILER_ID does not match 'GNU'!")
|
||||
# endif()
|
||||
#
|
||||
# include(FindPackageHandleStandardArgs)
|
||||
#
|
||||
# # Required: libgfortran, libquadmath, path for gfortran libraries
|
||||
# # Optional: libgomp, path for OpenMP headers, path for gcc/gfortran headers
|
||||
# find_package_handle_standard_args(GFortranLibs
|
||||
# REQUIRED_VARS LIBGFORTRAN_LIBRARIES LIBQUADMATH_LIBRARIES GFORTRAN_LIBRARIES_DIR
|
||||
# VERSION_VAR GFORTRAN_VERSION_STRING)
|
||||
#
|
||||
# if(GFORTRANLIBS_FOUND)
|
||||
# message(STATUS "Looking for gfortran libraries -- found")
|
||||
# message(STATUS "gfortran version: ${GFORTRAN_VERSION_STRING}")
|
||||
# else()
|
||||
# message(STATUS "Looking for gfortran libraries -- not found")
|
||||
# endif()
|
||||
#
|
||||
# mark_as_advanced(LIBGFORTRAN_LIBRARIES LIBQUADMATH_LIBRARIES
|
||||
# LIBGOMP_LIBRARIES LIBGOMP_INCLUDE_DIR
|
||||
# GFORTRAN_LIBRARIES_DIR GFORTRAN_INCLUDE_DIR)
|
||||
# # FindGFortranLIBS.cmake ends here
|
||||
|
||||
|
||||
enable_language(Fortran)
|
||||
if(CMAKE_Fortran_COMPILER_ID MATCHES "GNU")
|
||||
|
||||
# Basically, call "gfortran -v" to dump compiler info to the string
|
||||
# GFORTRAN_VERBOSE_STR, which will be used to get necessary paths
|
||||
message(STATUS "Extracting library and header information by calling 'gfortran -v'...")
|
||||
execute_process(COMMAND "${CMAKE_Fortran_COMPILER}" "-v" ERROR_VARIABLE
|
||||
GFORTRAN_VERBOSE_STR RESULT_VARIABLE FLAG)
|
||||
|
||||
# For debugging
|
||||
message(STATUS "'gfortran -v' returned:")
|
||||
message(STATUS "${GFORTRAN_VERBOSE_STR}")
|
||||
|
||||
# Detect gfortran version
|
||||
string(REGEX MATCH "gcc version [^\t\n ]+" GFORTRAN_VER_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
string(REGEX REPLACE "gcc version ([^\t\n ]+)" "\\1" GFORTRAN_VERSION_STRING "${GFORTRAN_VER_STR}")
|
||||
message(STATUS "Detected gfortran version ${GFORTRAN_VERSION_STRING}")
|
||||
unset(GFORTRAN_VER_STR)
|
||||
|
||||
set(MATCH_REGEX "[^\t\n ]+[\t\n ]+")
|
||||
set(REPLACE_REGEX "([^\t\n ]+)")
|
||||
|
||||
# Find architecture for compiler
|
||||
string(REGEX MATCH "Target: [^\t\n ]+"
|
||||
GFORTRAN_ARCH_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
message(STATUS "Architecture string: ${GFORTRAN_ARCH_STR}")
|
||||
string(REGEX REPLACE "Target: ([^\t\n ]+)" "\\1"
|
||||
GFORTRAN_ARCH "${GFORTRAN_ARCH_STR}")
|
||||
message(STATUS "Detected gfortran architecture: ${GFORTRAN_ARCH}")
|
||||
unset(GFORTRAN_ARCH_STR)
|
||||
|
||||
# Find install prefix, if it exists; if not, use default
|
||||
string(REGEX MATCH "--prefix=[^\t\n ]+[\t\n ]+"
|
||||
GFORTRAN_PREFIX_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
if(NOT GFORTRAN_PREFIX_STR)
|
||||
message(STATUS "Detected default gfortran prefix")
|
||||
set(GFORTRAN_PREFIX_DIR "/usr/local") # default prefix for gcc install
|
||||
else()
|
||||
string(REGEX REPLACE "--prefix=([^\t\n ]+)" "\\1"
|
||||
GFORTRAN_PREFIX_DIR "${GFORTRAN_PREFIX_STR}")
|
||||
endif()
|
||||
message(STATUS "Detected gfortran prefix: ${GFORTRAN_PREFIX_DIR}")
|
||||
unset(GFORTRAN_PREFIX_STR)
|
||||
|
||||
# Find install exec-prefix, if it exists; if not, use default
|
||||
string(REGEX MATCH "--exec-prefix=[^\t\n ]+[\t\n ]+" "\\1"
|
||||
GFORTRAN_EXEC_PREFIX_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
if(NOT GFORTRAN_EXEC_PREFIX_STR)
|
||||
message(STATUS "Detected default gfortran exec-prefix")
|
||||
set(GFORTRAN_EXEC_PREFIX_DIR "${GFORTRAN_PREFIX_DIR}")
|
||||
else()
|
||||
string(REGEX REPLACE "--exec-prefix=([^\t\n ]+)" "\\1"
|
||||
GFORTRAN_EXEC_PREFIX_DIR "${GFORTRAN_EXEC_PREFIX_STR}")
|
||||
endif()
|
||||
message(STATUS "Detected gfortran exec-prefix: ${GFORTRAN_EXEC_PREFIX_DIR}")
|
||||
UNSET(GFORTRAN_EXEC_PREFIX_STR)
|
||||
|
||||
# Find library directory and include directory, if library directory specified
|
||||
string(REGEX MATCH "--libdir=[^\t\n ]+"
|
||||
GFORTRAN_LIB_DIR_STR "${GFORTRAN_VERBOSE_STR}")
|
||||
if(NOT GFORTRAN_LIB_DIR_STR)
|
||||
message(STATUS "Found --libdir flag -- not found")
|
||||
message(STATUS "Using default gfortran library & include directory paths")
|
||||
set(GFORTRAN_LIBRARIES_DIR
|
||||
"${GFORTRAN_EXEC_PREFIX_DIR}/lib/gcc/${GFORTRAN_ARCH}/${GFORTRAN_VERSION_STRING}")
|
||||
string(CONCAT GFORTRAN_INCLUDE_DIR "${GFORTRAN_LIBRARIES_DIR}" "/include")
|
||||
else()
|
||||
message(STATUS "Found --libdir flag -- yes")
|
||||
string(REGEX REPLACE "--libdir=([^\t\n ]+)" "\\1"
|
||||
GFORTRAN_LIBRARIES_DIR "${GFORTRAN_LIB_DIR_STR}")
|
||||
string(CONCAT GFORTRAN_INCLUDE_DIR "${GFORTRAN_LIBRARIES_DIR}" "/gcc/" "${GFORTRAN_ARCH}" "/" "${GFORTRAN_VERSION_STRING}" "/include")
|
||||
endif()
|
||||
message(STATUS "gfortran libraries path: ${GFORTRAN_LIBRARIES_DIR}")
|
||||
message(STATUS "gfortran include path dir: ${GFORTRAN_INCLUDE_DIR}")
|
||||
unset(GFORTRAN_LIB_DIR_STR)
|
||||
|
||||
# There are lots of other build options for gcc & gfortran. For now, the
|
||||
# options implemented above should cover a lot of common use cases.
|
||||
|
||||
# Clean up be deleting the output string from "gfortran -v"
|
||||
unset(GFORTRAN_VERBOSE_STR)
|
||||
|
||||
# Find paths for libgfortran, libquadmath, libgomp
|
||||
# libgomp needed for OpenMP support without Clang
|
||||
find_library(LIBGFORTRAN_LIBRARIES NAMES gfortran libgfortran
|
||||
HINTS ${GFORTRAN_LIBRARIES_DIR})
|
||||
find_library(LIBQUADMATH_LIBRARIES NAMES quadmath libquadmath
|
||||
HINTS ${GFORTRAN_LIBRARIES_DIR})
|
||||
find_library(LIBGOMP_LIBRARIES NAMES gomp libgomp
|
||||
HINTS ${GFORTRAN_LIBRARIES_DIR})
|
||||
|
||||
# Find OpenMP headers
|
||||
find_path(LIBGOMP_INCLUDE_DIR NAMES omp.h HINTS ${GFORTRAN_INCLUDE_DIR})
|
||||
|
||||
else()
|
||||
message(STATUS "CMAKE_Fortran_COMPILER_ID does not match 'GNU'!")
|
||||
endif()
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
|
||||
# Required: libgfortran, libquadmath, path for gfortran libraries
|
||||
# Optional: libgomp, path for OpenMP headers, path for gcc/gfortran headers
|
||||
find_package_handle_standard_args(GFortranLibs
|
||||
REQUIRED_VARS LIBGFORTRAN_LIBRARIES LIBQUADMATH_LIBRARIES GFORTRAN_LIBRARIES_DIR
|
||||
VERSION_VAR GFORTRAN_VERSION_STRING)
|
||||
|
||||
if(GFORTRANLIBS_FOUND)
|
||||
message(STATUS "Looking for gfortran libraries -- found")
|
||||
message(STATUS "gfortran version: ${GFORTRAN_VERSION_STRING}")
|
||||
else()
|
||||
message(STATUS "Looking for gfortran libraries -- not found")
|
||||
endif()
|
||||
|
||||
mark_as_advanced(LIBGFORTRAN_LIBRARIES LIBQUADMATH_LIBRARIES
|
||||
LIBGOMP_LIBRARIES LIBGOMP_INCLUDE_DIR
|
||||
GFORTRAN_LIBRARIES_DIR GFORTRAN_INCLUDE_DIR)
|
||||
# FindGFortranLIBS.cmake ends here
|
||||
# if (NOT "$ENV{FC}" STREQUAL "")
|
||||
# set(FC "$ENV{FC}" CACHE INTERNAL "Got from environment variable")
|
||||
# set(CMAKE_Fortran_COMPILER "$ENV{FC}" CACHE INTERNAL "Got from environment variable")
|
||||
# set(GFORTRANLIBS_FOUND "1" CACHE INTERNAL "found environment variable")
|
||||
# endif()
|
||||
|
|
|
|||
|
|
@ -32,20 +32,28 @@
|
|||
# WCSLIB_LIBRARIES - the WCSLIB libraries
|
||||
# (identical to WCSLIB_LIBRARY)
|
||||
|
||||
# find paths
|
||||
if(NOT WCSLIB_FOUND)
|
||||
|
||||
find_path(WCSLIB_INCLUDE_DIR wcslib/wcs.h
|
||||
HINTS ${WCSLIB_ROOT_DIR} PATH_SUFFIXES include)
|
||||
find_library(WCSLIB_LIBRARY wcs
|
||||
HINTS ${WCSLIB_ROOT_DIR} PATH_SUFFIXES lib)
|
||||
if (NOT "$ENV{WCSLIB_ROOT_DIR}" STREQUAL "")
|
||||
set(WCSLIB_ROOT "$ENV{WCSLIB_ROOT_DIR}" CACHE INTERNAL "Got from environment variable")
|
||||
endif()
|
||||
|
||||
find_path(WCSLIB_INCLUDE wcslib/wcs.h
|
||||
HINTS ${WCSLIB_ROOT} PATH_SUFFIXES include)
|
||||
find_library(WCSLIB_LIB wcs
|
||||
HINTS ${WCSLIB_ROOT} PATH_SUFFIXES lib)
|
||||
find_library(M_LIBRARY m)
|
||||
mark_as_advanced(WCSLIB_INCLUDE_DIR WCSLIB_LIBRARY M_LIBRARY)
|
||||
mark_as_advanced(WCSLIB_INCLUDE WCSLIB_LIB M_LIBRARY)
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
find_package_handle_standard_args(WCSLIB DEFAULT_MSG
|
||||
WCSLIB_LIBRARY M_LIBRARY WCSLIB_INCLUDE_DIR)
|
||||
WCSLIB_LIB M_LIBRARY WCSLIB_INCLUDE)
|
||||
|
||||
set(WCSLIB_INCLUDE_DIRS ${WCSLIB_INCLUDE_DIR})
|
||||
set(WCSLIB_LIBRARIES ${WCSLIB_LIBRARY} ${M_LIBRARY})
|
||||
set(WCSLIB_INCLUDE_DIRS ${WCSLIB_INCLUDE})
|
||||
set(WCSLIB_LIBRARIES ${WCSLIB_LIB} ${M_LIBRARY})
|
||||
|
||||
set(WCSLIB_INCLUDE ${WCSLIB_INCLUDE})
|
||||
set(WCSLIB_LIB ${WCSLIB_LIB} ${M_LIBRARY})
|
||||
|
||||
endif(NOT WCSLIB_FOUND)
|
||||
|
|
|
|||
|
|
@ -0,0 +1,36 @@
|
|||
#!/usr/bin/env bash
|
||||
|
||||
version=$(date +"%d%m%Y")
|
||||
|
||||
for folder in \
|
||||
sl7-test \
|
||||
ubuntu1604-test
|
||||
|
||||
do
|
||||
name=${folder%%/}
|
||||
echo
|
||||
echo "==========================================="
|
||||
echo "Building: "$name
|
||||
echo "==========================================="
|
||||
|
||||
cmd="docker build -t fdiblen/$name:$version -t fdiblen/$name:latest ./$name"
|
||||
echo
|
||||
echo "Running:"
|
||||
echo $cmd
|
||||
echo
|
||||
echo
|
||||
eval $cmd
|
||||
|
||||
if [ $? -eq 0 ]
|
||||
then
|
||||
echo
|
||||
echo "Successfully built the $name image!"
|
||||
else
|
||||
echo
|
||||
echo "Could not build the $name image" >&2
|
||||
exit $?
|
||||
fi
|
||||
|
||||
#docker push fdiblen/$name:$version
|
||||
#docker push fdiblen/$name:latest
|
||||
done
|
||||
|
|
@ -0,0 +1,42 @@
|
|||
FROM scientificlinux/sl:7
|
||||
MAINTAINER f.diblen@esciencecenter.nl
|
||||
|
||||
# add EPEL repository for openblas
|
||||
RUN yum -y \
|
||||
install https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
|
||||
|
||||
# install dependencies
|
||||
RUN yum -y install \
|
||||
wget git pkgconfig make cmake3 cmake3-gui gcc-gfortran gcc-c++ flex bison \
|
||||
openblas openblas-devel glib2-devel lapack lapack-devel cfitsio cfitsio-devel \
|
||||
wcslib wcslib-devel ncurses ncurses-devel readline readline-devel \
|
||||
python-devel boost boost-devel fftw fftw-devel hdf5 hdf5-devel \
|
||||
numpy boost-python mpich mpich-devel fftw fftw-libs fftw-devel
|
||||
|
||||
RUN mkdir /build && cd /build
|
||||
|
||||
# compile casacore
|
||||
RUN git clone --progress --verbose https://github.com/casacore/casacore.git casacore_src && \
|
||||
cd casacore_src && \
|
||||
mkdir build && cd build && \
|
||||
cmake3 .. -DUSE_FFTW3=ON \
|
||||
-DCMAKE_INSTALL_PREFIX=/opt/casacore \
|
||||
-DDATA_DIR=/opt/casacore/data -DUSE_OPENMP=ON \
|
||||
-DUSE_HDF5=ON \
|
||||
-DBUILD_PYTHON=ON \
|
||||
-DUSE_THREADS=ON && \
|
||||
make -j4 && \
|
||||
make install
|
||||
|
||||
|
||||
## compile sagecal
|
||||
#RUN cd /build && \
|
||||
# mkdir build-sl && cd build-sl && \
|
||||
# cmake3 .. -DCMAKE_INSTALL_PREFIX=/opt/sagecal \
|
||||
# -DCASACORE_ROOT_DIR=/opt/casacore \
|
||||
# -DCASACORE_INCLUDE=/opt/casacore/include/casacore
|
||||
# make -j4 && \
|
||||
# make install && \
|
||||
#
|
||||
#RUN ls -alsrt /opt/sagecal && \
|
||||
# /opt/sagecal/bin/sagecal
|
||||
|
|
@ -0,0 +1,28 @@
|
|||
FROM ubuntu:xenial
|
||||
MAINTAINER f.diblen@esciencecenter.nl
|
||||
|
||||
RUN apt-get update -y && \
|
||||
apt-get install software-properties-common -y && \
|
||||
add-apt-repository -s ppa:kernsuite/kern-3 -y && \
|
||||
apt-add-repository multiverse && \
|
||||
apt-get update -y
|
||||
|
||||
RUN apt-get install -y \
|
||||
git cmake g++ pkg-config \
|
||||
libcfitsio-bin libcfitsio-dev \
|
||||
libopenblas-base libopenblas-dev \
|
||||
wcslib-dev wcslib-tools \
|
||||
libglib2.0-dev \
|
||||
libcasa-casa2 casacore-dev casacore-data casacore-tools \
|
||||
mpich \
|
||||
fftw-dev libfftw3-mpi3 libfftw3-bin
|
||||
|
||||
|
||||
## compile sagecal
|
||||
#RUN mkdir /build && cd /build \
|
||||
# mkdir build-ubuntu && cd build-ubuntu && \
|
||||
# cmake .. -DCMAKE_INSTALL_PREFIX=/opt/sagecal && \
|
||||
# make -j4 && \
|
||||
# make install && \
|
||||
# ls -alsrt /opt/sagecal && \
|
||||
# /opt/sagecal/bin/sagecal
|
||||
|
|
@ -1,11 +0,0 @@
|
|||
#!/bin/bash
|
||||
|
||||
echo "Building SageCal" && \
|
||||
echo "Branch --> $BRANCH" && \
|
||||
cd /travis/workdir && \
|
||||
mkdir build-arch && cd build-arch && \
|
||||
cmake .. -DENABLE_CUDA=OFF && \
|
||||
make -j4 && \
|
||||
ls -alsrt ./dist/bin && \
|
||||
./dist/bin/sagecal
|
||||
|
||||
|
|
@ -1,4 +0,0 @@
|
|||
#!/bin/bash
|
||||
|
||||
pacman -Syy --needed --noconfirm \
|
||||
base-devel cmake git glib2 cfitsio wcslib
|
||||
|
|
@ -0,0 +1,56 @@
|
|||
#!/usr/bin/env bash
|
||||
|
||||
echo 'script: ' $0
|
||||
|
||||
echo "Building SageCal" && \
|
||||
echo "Branch --> $BRANCH" && \
|
||||
echo "Image --> $IMAGE"
|
||||
|
||||
BUILD_DIR=$IMAGE'-build'
|
||||
|
||||
cd /travis/workdir && \
|
||||
mkdir $BUILD_DIR && cd $BUILD_DIR
|
||||
|
||||
CMAKE_EXE=''
|
||||
OPTS=''
|
||||
|
||||
case $IMAGE in
|
||||
ubuntu)
|
||||
echo 'Building for Ubuntu'
|
||||
CMAKE_EXE=$(which cmake)
|
||||
OPTS=''
|
||||
;;
|
||||
sl7)
|
||||
echo 'Building for Scientific Linux'
|
||||
CMAKE_EXE=$(which cmake3)
|
||||
OPTS='-DCASACORE_ROOT_DIR=/opt/casacore'
|
||||
;;
|
||||
arch)
|
||||
OPTS=''
|
||||
;;
|
||||
*)
|
||||
echo 'Unknown image $IMAGE!'
|
||||
exit 1
|
||||
;;
|
||||
esac
|
||||
|
||||
echo 'CMAKE_EXE: ' $CMAKE_EXE
|
||||
echo 'CMake options: ' $OPTS
|
||||
echo 'pwd: ' $PWD
|
||||
|
||||
echo 'ls -asl: '
|
||||
ls -asl
|
||||
|
||||
echo 'ls -asl /travis/workdir: '
|
||||
ls -asl /travis/workdir
|
||||
|
||||
echo 'ls -asl /travis/workdir/$BUILD_DIR: '
|
||||
ls -asl /travis/workdir/$BUILD_DIR
|
||||
|
||||
|
||||
$CMAKE_EXE /travis/workdir -DCMAKE_INSTALL_PREFIX=/opt/sagecal $OPTS
|
||||
|
||||
make -j4 && \
|
||||
make install && \
|
||||
ls -alsrt /opt/sagecal && \
|
||||
/opt/sagecal/bin/sagecal
|
||||
|
|
@ -1,32 +0,0 @@
|
|||
#!/bin/bash
|
||||
|
||||
echo "Building SageCal for Scientific Linux" && \
|
||||
echo "Branch --> $BRANCH" && \
|
||||
cd /travis/workdir
|
||||
|
||||
# compile casacore first
|
||||
|
||||
# mkdir -p /opt/soft/casacore/data
|
||||
# cd /opt/soft/casacore/data
|
||||
# wget -c ftp://ftp.astron.nl/outgoing/Measures/WSRT_Measures.ztar
|
||||
# tar zxfv WSRT_Measures.ztar && rm -f WSRT_Measures.ztar
|
||||
|
||||
cd /travis/workdir
|
||||
git clone --progress --verbose https://github.com/casacore/casacore.git casacore_src && cd casacore_src
|
||||
|
||||
mkdir build && cd build
|
||||
cmake3 -DUSE_FFTW3=ON -DCMAKE_INSTALL_PREFIX=/opt/soft/casacore -DDATA_DIR=/opt/soft/casacore/data -DUSE_OPENMP=ON \
|
||||
-DUSE_HDF5=ON -DBUILD_PYTHON=ON -DUSE_THREADS=ON ..
|
||||
make -j4
|
||||
make install
|
||||
|
||||
# compile sagecal
|
||||
cd /travis/workdir && \
|
||||
mkdir build-sl && cd build-sl
|
||||
|
||||
cmake3 .. -DENABLE_CUDA=OFF && \
|
||||
-DCASACORE_ROOT_DIR=/opt/soft/casacore -DCASACORE_INCLUDE=/opt/soft/casacore/include/casacore
|
||||
make -j4 && \
|
||||
ls -alsrt ./dist/bin && \
|
||||
./dist/bin/sagecal
|
||||
|
||||
|
|
@ -1,11 +0,0 @@
|
|||
#!/bin/bash
|
||||
|
||||
# add EPEL repository for openblas
|
||||
yum -y install https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
|
||||
|
||||
# install dependencies
|
||||
yum -y install wget git pkgconfig make cmake3 cmake3-gui gcc-gfortran gcc-c++ flex bison \
|
||||
openblas openblas-devel glib2-devel lapack lapack-devel cfitsio cfitsio-devel \
|
||||
wcslib wcslib-devel ncurses ncurses-devel readline readline-devel\
|
||||
python-devel boost boost-devel fftw fftw-devel hdf5 hdf5-devel\
|
||||
numpy boost-python
|
||||
|
|
@ -1,11 +0,0 @@
|
|||
#!/bin/bash
|
||||
|
||||
echo "Building SageCal" && \
|
||||
echo "Branch --> $BRANCH" && \
|
||||
cd /travis/workdir && \
|
||||
mkdir build-ubuntu && cd build-ubuntu && \
|
||||
cmake .. -DENABLE_CUDA=OFF && \
|
||||
make -j4 && \
|
||||
ls -alsrt ./dist/bin && \
|
||||
./dist/bin/sagecal
|
||||
|
||||
|
|
@ -1,9 +0,0 @@
|
|||
#!/bin/bash
|
||||
|
||||
apt-get update -y
|
||||
apt-get install software-properties-common -y
|
||||
add-apt-repository -s ppa:kernsuite/kern-3 -y
|
||||
apt-add-repository multiverse
|
||||
apt-get update -y
|
||||
apt-get install -y git cmake g++ pkg-config libcfitsio-bin libcfitsio-dev libopenblas-base libopenblas-dev wcslib-dev wcslib-tools libglib2.0-dev libcasa-casa2 casacore-dev casacore-data casacore-tools
|
||||
|
||||
|
|
@ -18,7 +18,7 @@ add_executable(sagecal-mpi ${SRCFILES})
|
|||
|
||||
target_link_libraries(sagecal-mpi
|
||||
${CASACORE_LIBRARIES}
|
||||
${CFITSIO_LIBRARIES}
|
||||
${CFITSIO_LIB}
|
||||
${OpenBLAS_LIB}
|
||||
${LAPACK_LIBRARIES}
|
||||
${WCSLIB_LIBRARIES}
|
||||
|
|
@ -29,7 +29,6 @@ target_link_libraries(sagecal-mpi
|
|||
-lopenblas
|
||||
-lgfortran
|
||||
-lpthread
|
||||
-lcfitsio
|
||||
-lm
|
||||
-ldirac
|
||||
-lradio
|
||||
|
|
|
|||
|
|
@ -1 +0,0 @@
|
|||
../MS/data.cpp
|
||||
File diff suppressed because it is too large
Load Diff
|
|
@ -1 +0,0 @@
|
|||
../MS/data.h
|
||||
|
|
@ -0,0 +1,174 @@
|
|||
/*
|
||||
*
|
||||
Copyright (C) 2006-2008 Sarod Yatawatta <sarod@users.sf.net>
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
$Id$
|
||||
*/
|
||||
|
||||
#ifndef __DATA_H__
|
||||
#define __DATA_H__
|
||||
#include <unistd.h>
|
||||
#include <stdio.h>
|
||||
#include <iostream>
|
||||
#include <casacore/ms/MeasurementSets/MSIter.h>
|
||||
#include <casacore/tables/Tables/Table.h>
|
||||
#include <casacore/tables/Tables/TableVector.h>
|
||||
#include <casacore/tables/Tables/TableRecord.h>
|
||||
#include <casacore/tables/Tables/TableColumn.h>
|
||||
#include <casacore/tables/Tables/TableIter.h>
|
||||
#include <casacore/tables/Tables/ScalarColumn.h>
|
||||
#include <casacore/tables/Tables/ArrayColumn.h>
|
||||
#include <casacore/casa/Arrays/Array.h>
|
||||
#include <casacore/casa/Arrays/Cube.h>
|
||||
#include <fstream>
|
||||
#include <math.h>
|
||||
#include <complex>
|
||||
|
||||
|
||||
using namespace casacore;
|
||||
|
||||
namespace Data
|
||||
{
|
||||
|
||||
struct IOData {
|
||||
int N; /* no of stations */
|
||||
int Nbase; /* baselines, exclude autocorrelations */
|
||||
int tilesz;
|
||||
int Nchan; /* total no of channels */
|
||||
int Nms; /* no. of MS */
|
||||
int *NchanMS; /* total channels per MS : Nms x 1 vector */
|
||||
double deltat; /* integration time (s) */
|
||||
int totalt; /* total no of time slots */
|
||||
double ra0; /* phase center */
|
||||
double dec0; /* phase center */
|
||||
double *u; /* uvw coords, size Nbase*tilesz x 1 */
|
||||
double *v;
|
||||
double *w;
|
||||
double *x; /* averaged data, size Nbase*8*tilez x 1
|
||||
ordered by XX(re,im),XY(re,im),YX(re,im),YY(re,im), baseline, timeslots */
|
||||
double *xo; /* unaveraged data, size Nbase*8*tilesz*Nchan x 1
|
||||
ordered by XX(re,im),XY(re,im),YX(re,im),YY(re,im), baseline, timeslots, channel */
|
||||
double *freqs; /* channel freqs, size Nchan x 1 */
|
||||
double freq0; /* averaged freq */
|
||||
double *flag; /* double for conforming with old routines size Nbase*tilesz x 1 */
|
||||
double deltaf; /* total bandwidth for freq. smearing */
|
||||
|
||||
double fratio; /* flagged data ratio = flagged/total, not counting data excluded from uv cut */
|
||||
/* if 1, all usable data are flagged */
|
||||
};
|
||||
|
||||
/* Station beam info */
|
||||
struct LBeam {
|
||||
double *time_utc; /* time coord UTC (s), size tileszx1,
|
||||
convert from MJD (s) to JD (days) */
|
||||
int *Nelem; /* no of elements in each station, size Nx1 */
|
||||
/* position (ITRF) of stations (m)
|
||||
later changed to logitude,latitude,height (rad,rad,m) */
|
||||
double *sx; /* x: size Nx1 */
|
||||
double *sy; /* y: ... */
|
||||
double *sz; /* z: ... */
|
||||
/* x,y,z coords of elements, projected, converted to ITRF (m) */
|
||||
double **xx; /* x coord pointer, size Nx1, each *x: x coord of station, size Nelem[]x1 */
|
||||
double **yy; /* y ... */
|
||||
double **zz; /* z ... */
|
||||
/* pointing center of beams (only one) (could be different from phase center) */
|
||||
double p_ra0;
|
||||
double p_dec0;
|
||||
};
|
||||
|
||||
|
||||
/* read Auxilliary info and setup memory */
|
||||
void readAuxData(const char *fname, IOData *data);
|
||||
void readAuxData(const char *fname, IOData *data, LBeam *binfo);
|
||||
|
||||
void readAuxDataList(vector<string> msnames, IOData *data);
|
||||
|
||||
void readMSlist(char *fname, vector<string> *msnames);
|
||||
/* load data using MS Iterator */
|
||||
void loadData(Table t, IOData iodata, double *fratio);
|
||||
void loadData(Table t, IOData iodata, LBeam binfo, double *fratio);
|
||||
|
||||
void loadDataList(vector<MSIter*> msitr, Data::IOData iodata, double *fratio);
|
||||
/* write back data using MS Iterator */
|
||||
void writeData(Table t, IOData iodata);
|
||||
void writeDataList(vector<MSIter*> msitr, IOData iodata);
|
||||
void freeData(IOData data);
|
||||
void freeData(IOData data, LBeam binfo);
|
||||
|
||||
extern int numChannels;
|
||||
extern unsigned long int numRows;
|
||||
|
||||
struct float2 {
|
||||
float x,y;
|
||||
};
|
||||
|
||||
|
||||
extern char *TableName; /* MS name */
|
||||
extern char *MSlist; /* text file with MS names */
|
||||
extern char *MSpattern; /* pattern to match all MS names used in calibration */
|
||||
extern float min_uvcut;
|
||||
extern float max_uvcut;
|
||||
extern float max_uvtaper;
|
||||
extern casacore::String DataField; /* input column DATA/CORRECTED_DATA */
|
||||
extern casacore::String OutField; /* output column DATA/CORRECTED_DATA */
|
||||
extern int TileSize; //Tile size
|
||||
extern int Nt; /* no of worker threads */
|
||||
extern char *SkyModel; /* sky model file */
|
||||
extern char *Clusters; /* cluster file */
|
||||
extern int format; /* sky model format 0: LSM, 1: LSM with 3 order spec idx*/
|
||||
|
||||
/* sagecal paramters */
|
||||
extern int max_emiter;
|
||||
extern int max_iter;
|
||||
extern int max_lbfgs;
|
||||
extern int lbfgs_m;
|
||||
extern int gpu_threads;
|
||||
extern int linsolv;
|
||||
extern int solver_mode;
|
||||
extern int ccid;
|
||||
extern double rho;
|
||||
extern char *solfile;
|
||||
extern char *initsolfile;
|
||||
extern char *ignorefile;
|
||||
extern double nulow,nuhigh;
|
||||
extern int randomize;
|
||||
extern int whiten;
|
||||
extern int DoSim; /* if 1, simulation mode */
|
||||
extern int doChan; /* if 1, solve for each channel in multi channel data */
|
||||
extern int doBeam; /* if 1, predict (LOFAR) beam array factor */
|
||||
extern int DoDiag; /* if >0, enables diagnostics (Leverage) 1: write leverage as output (no residual), 2: only calculate fractions of leverage/noise */
|
||||
extern int phaseOnly; /* if >0, and if any correction is done, extract phase and do phase only correction */
|
||||
|
||||
/* distributed sagecal parameters */
|
||||
extern int Nadmm; /* ADMM iterations >=1 */
|
||||
extern int Npoly; /* polynomial order >=1 */
|
||||
extern int PolyType; /* what kind on polynomials to use 0,1,2,3 */
|
||||
extern double admm_rho; /* regularization */
|
||||
extern char *admm_rho_file; /* text file for regularization of each cluster */
|
||||
extern int aadmm; /* if >0, enable adaptive update of rho */
|
||||
/* for debugging, upper limit on time slots */
|
||||
extern int Nmaxtime;
|
||||
/* skipping initial timeslots */
|
||||
extern int Nskip;
|
||||
extern int verbose; /* if >0, enable verbose output */
|
||||
extern int mdl; /* if given, calculate AIC/MDL for different poly configs and find minimum */
|
||||
extern int GPUpredict; /* if given, use GPU for model calculation */
|
||||
extern int heapsize; /* heap size in GPU (MB), for using malloc() */
|
||||
/* for client server mode */
|
||||
extern int servermode; /* 0: client, 1: server, else default operation */
|
||||
extern char *servername; /* server host name or ip address */
|
||||
extern char *portnumber; /* which port number to use for communication */
|
||||
}
|
||||
#endif //__DATA_H__
|
||||
|
|
@ -23,7 +23,7 @@ add_executable(sagecal ${SRCFILES})
|
|||
|
||||
target_link_libraries(sagecal
|
||||
${CASACORE_LIBRARIES}
|
||||
${CFITSIO_LIBRARIES}
|
||||
${CFITSIO_LIB}
|
||||
${OpenBLAS_LIB}
|
||||
${LAPACK_LIBRARIES}
|
||||
${WCSLIB_LIBRARIES}
|
||||
|
|
@ -32,7 +32,6 @@ target_link_libraries(sagecal
|
|||
-lopenblas
|
||||
-lgfortran
|
||||
-lpthread
|
||||
-lcfitsio
|
||||
-lm
|
||||
-ldirac
|
||||
-lradio
|
||||
|
|
|
|||
|
|
@ -1,5 +1,6 @@
|
|||
find_package(WcsLib REQUIRED)
|
||||
include_directories(${WCSLIB_INCLUDE_DIR}/wcslib)
|
||||
include_directories(${WCSLIB_INCLUDE_DIRS}/wcslib)
|
||||
include_directories(${WCSLIB_INCLUDE_DIRS})
|
||||
include_directories(./)
|
||||
|
||||
link_directories(${LIBRARY_OUTPUT_PATH})
|
||||
|
|
@ -8,7 +9,7 @@ FILE(GLOB SRCFILES *.c)
|
|||
add_executable(buildsky ${SRCFILES})
|
||||
|
||||
target_link_libraries(buildsky
|
||||
${CFITSIO_LIBRARIES}
|
||||
${CFITSIO_LIB}
|
||||
${OpenBLAS_LIB}
|
||||
${LAPACK_LIBRARIES}
|
||||
${WCSLIB_LIBRARIES}
|
||||
|
|
@ -17,7 +18,6 @@ target_link_libraries(buildsky
|
|||
-lopenblas
|
||||
-lgfortran
|
||||
-lpthread
|
||||
-lcfitsio
|
||||
-lm
|
||||
)
|
||||
|
||||
|
|
|
|||
|
|
@ -1,6 +1,7 @@
|
|||
find_package(WcsLib REQUIRED)
|
||||
find_package(FFTW REQUIRED)
|
||||
include_directories(${WCSLIB_INCLUDE_DIR}/wcslib)
|
||||
include_directories(${WCSLIB_INCLUDE_DIRS}/wcslib)
|
||||
include_directories(${WCSLIB_INCLUDE_DIRS})
|
||||
include_directories(./)
|
||||
|
||||
link_directories(${LIBRARY_OUTPUT_PATH})
|
||||
|
|
@ -9,7 +10,7 @@ FILE(GLOB SRCFILES *.c)
|
|||
add_executable(restore ${SRCFILES})
|
||||
|
||||
target_link_libraries(restore
|
||||
${CFITSIO_LIBRARIES}
|
||||
${CFITSIO_LIB}
|
||||
${OpenBLAS_LIB}
|
||||
${LAPACK_LIBRARIES}
|
||||
${WCSLIB_LIBRARIES}
|
||||
|
|
@ -20,7 +21,6 @@ target_link_libraries(restore
|
|||
-lopenblas
|
||||
-lgfortran
|
||||
-lpthread
|
||||
-lcfitsio
|
||||
-lm
|
||||
)
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue