add hdf5 checks and libraries

CMakeLists.txt

@@ -95,6 +95,10 @@ include_directories(${OpenBLAS_INCLUDE_DIR})
 #find_package(GFortranLibs REQUIRED)
 #include_directories(${GFORTRAN_INCLUDE_DIR})
 
+#hdf5
+find_package(HDF5 REQUIRED)
+
+
 #glib
 pkg_check_modules(GLIB_PKG glib-2.0)
 if (GLIB_PKG_FOUND)
@@ -154,6 +158,9 @@ message (STATUS "CFITSIO-LIBS .......... = ${CFITSIO_LIBRARIES}")
 message (STATUS "WCSLIB-INC  ........... = ${WCSLIB_INCLUDE_DIR}")
 message (STATUS "WCSLIB-LIBS ........... = ${WCSLIB_LIBRARIES}")
 
+message (STATUS "HDF5-INC  ........... = ${HDF5_INCLUDE_DIRS}")
+message (STATUS "HDF5-LIBS ........... = ${HDF5_LIBRARIES}")
+
 
 
 #--------------------------------------- include directories

src/MS/CMakeLists.txt

@@ -1,4 +1,5 @@
 include_directories(${CASACORE_INCLUDE_DIR}/casacore)
+include_directories(${HDF5_INCLUDE_DIRS})
 
 include_directories(${CMAKE_CURRENT_SOURCE_DIR}/../lib/Dirac)
 include_directories(${CMAKE_CURRENT_SOURCE_DIR}/../lib/Radio)
@@ -27,6 +28,7 @@ target_link_libraries(sagecal
  ${WCSLIB_LIBRARIES}
  ${GLIB_PKG_LIBRARIES}
  ${LIBGFORTRAN_LIBRARIES}
+ ${HDF5_LIBRARIES}
  -lopenblas
  -lgfortran
  -lpthread