fix missing modules on das5
This commit is contained in:
Faruk D
parent
6b9a037e45
commit
a3a97c041c
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@ -50,14 +50,15 @@ IF("${isSystemDir}" STREQUAL "-1")
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SET(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
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ENDIF("${isSystemDir}" STREQUAL "-1")
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# libsynthesis has mix of C++ and Fortran which is not handled well by
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# versions before 2.8.
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if(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} LESS 2.8)
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if(NOT LIB_EXTRA_SYNTHESIS)
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set(LIB_EXTRA_SYNTHESIS gfortran)
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endif(NOT LIB_EXTRA_SYNTHESIS)
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endif(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} LESS 2.8)
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# # libsynthesis has mix of C++ and Fortran which is not handled well by
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# # versions before 2.8.
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# if(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} LESS 2.8)
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# if(NOT LIB_EXTRA_SYNTHESIS)
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# set(LIB_EXTRA_SYNTHESIS gfortran)
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# endif(NOT LIB_EXTRA_SYNTHESIS)
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# endif(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} LESS 2.8)
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#
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#--------------------------------------- SageCal dependencies
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@ -91,10 +92,21 @@ include_directories(${OpenBLAS_INCLUDE_DIR})
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#find_package(BLAS REQUIRED)
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#include_directories(${BLAS_INCLUDE_DIR})
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# FIXME: is this really needed?
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##gfortran
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# ##gfortran
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enable_language(Fortran)
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#find_package(GFortranLibs REQUIRED)
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#include_directories(${GFORTRAN_INCLUDE_DIR})
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# include_directories(${GFORTRAN_INCLUDE_DIR})
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# enable_language(Fortran)
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# # get_filename_component (Fortran_COMPILER_NAME ${CMAKE_Fortran_COMPILER} NAME)
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# set(FC "$ENV{FC}" CACHE INTERNAL "Got from environment variable")
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# set(CMAKE_Fortran_COMPILER "$ENV{FC}" CACHE INTERNAL "Got from environment variable")
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#
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##hdf5
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#find_package(HDF5 REQUIRED)
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@ -144,28 +156,30 @@ message (STATUS "CMAKE_CXX_FLAGS ....... = ${CMAKE_CXX_FLAGS}")
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message (STATUS "ENABLE_MPI ............ = ${ENABLE_MPI}")
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message (STATUS "ENABLE_CUDA ........... = ${ENABLE_CUDA}")
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message (STATUS "CASACORE_INCLUDE_DIR........... = ${CASACORE_INCLUDE_DIR}")
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message (STATUS "CASACORE_LIBRARIES........... = ${CASACORE_LIBRARIES}")
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message (STATUS "CASACORE_INCLUDE_DIR....= ${CASACORE_INCLUDE_DIR}")
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message (STATUS "CASACORE_LIBRARIES......= ${CASACORE_LIBRARIES}")
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message (STATUS "OpenBLAS_LIB .......... = ${OpenBLAS_LIB}")
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message (STATUS "GLIB_PKG_INCLUDE_DIRS.............. = ${GLIB_PKG_INCLUDE_DIRS}")
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message (STATUS "GLIB_PKG_LIBRARIES............. = ${GLIB_PKG_LIBRARIES}")
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message (STATUS "GLIB_PKG_INCLUDE_DIRS...= ${GLIB_PKG_INCLUDE_DIRS}")
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message (STATUS "GLIB_PKG_LIBRARIES......= ${GLIB_PKG_LIBRARIES}")
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#message (STATUS "LAPACK-INC ............ = ${LAPACK_INCLUDE_DIR}")
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message (STATUS "LAPACK_LIBRARIES........... = ${LAPACK_LIBRARIES}")
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message (STATUS "LAPACK_LIBRARIES........= ${LAPACK_LIBRARIES}")
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#message (STATUS "GFORTRAN-INC ......... = ${GFORTRAN_INCLUDE_DIR}")
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#message (STATUS "GFORTRAN-LIBS ......... = ${LIBGFORTRAN_LIBRARIES}")
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# message (STATUS "GFORTRAN-INC ......... = ${GFORTRAN_INCLUDE_DIR}")
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# message (STATUS "GFORTRAN-LIBS ......... = ${LIBGFORTRAN_LIBRARIES}")
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message (STATUS "CMAKE_Fortran_COMPILER = ${CMAKE_Fortran_COMPILER}")
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message (STATUS "CFITSIO_INCLUDE.......... = ${CFITSIO_INCLUDE}")
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message (STATUS "CFITSIO_LIB.......... = ${CFITSIO_LIB}")
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message (STATUS "CFITSIO_ROOT_DIR........= ${CFITSIO_ROOT_DIR}")
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message (STATUS "CFITSIO_INCLUDE.........= ${CFITSIO_INCLUDE}")
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message (STATUS "CFITSIO_LIB.............= ${CFITSIO_LIB}")
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message (STATUS "WCSLIB_INCLUDE_DIR........... = ${WCSLIB_INCLUDE_DIR}")
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message (STATUS "WCSLIB_LIBRARIES ........... = ${WCSLIB_LIBRARIES}")
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message (STATUS "WCSLIB_INCLUDE_DIRS.....= ${WCSLIB_INCLUDE_DIRS}")
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message (STATUS "WCSLIB_LIBRARIES .......= ${WCSLIB_LIBRARIES}")
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message (STATUS "HDF5_INCLUDE_DIR........... = ${HDF5_INCLUDE_DIRS}")
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message (STATUS "HDF5_LIBRARIES........... = ${HDF5_LIBRARIES}")
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message (STATUS "HDF5_INCLUDE_DIR........= ${HDF5_INCLUDE_DIRS}")
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message (STATUS "HDF5_LIBRARIES..........= ${HDF5_LIBRARIES}")
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@ -71,7 +71,15 @@
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# directly fed to the linker.
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#
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# Usage: casacore_resolve_dependencies(result components...)
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#
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if (NOT "$ENV{CASACORE_ROOT_DIR}" STREQUAL "")
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set(CASACORE_ROOT_DIR "$ENV{CASACORE_ROOT_DIR}" CACHE INTERNAL "Got from environment variable")
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endif()
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macro(casacore_resolve_dependencies _result)
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set(${_result} ${ARGN})
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set(_index 0)
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@ -33,6 +33,11 @@
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if(NOT CFITSIO_FOUND)
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if (NOT "$ENV{CFITSIO_ROOT_DIR}" STREQUAL "")
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set(CFITSIO_ROOT_DIR "$ENV{CFITSIO_ROOT_DIR}" CACHE INTERNAL "Got from environment variable")
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endif()
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find_path(CFITSIO_INCLUDE fitsio.h
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HINTS ${CFITSIO_ROOT_DIR} PATH_SUFFIXES include include/cfitsio
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include/libcfitsio0)
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@ -24,120 +24,128 @@ if(NOT CMAKE_REQUIRED_QUIET)
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message(STATUS "Looking for gfortran related libraries...")
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endif()
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# enable_language(Fortran)
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# if(CMAKE_Fortran_COMPILER_ID MATCHES "GNU")
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#
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# # Basically, call "gfortran -v" to dump compiler info to the string
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# # GFORTRAN_VERBOSE_STR, which will be used to get necessary paths
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# message(STATUS "Extracting library and header information by calling 'gfortran -v'...")
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# execute_process(COMMAND "${CMAKE_Fortran_COMPILER}" "-v" ERROR_VARIABLE
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# GFORTRAN_VERBOSE_STR RESULT_VARIABLE FLAG)
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#
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# # For debugging
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# message(STATUS "'gfortran -v' returned:")
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# message(STATUS "${GFORTRAN_VERBOSE_STR}")
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#
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# # Detect gfortran version
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# string(REGEX MATCH "gcc version [^\t\n ]+" GFORTRAN_VER_STR "${GFORTRAN_VERBOSE_STR}")
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# string(REGEX REPLACE "gcc version ([^\t\n ]+)" "\\1" GFORTRAN_VERSION_STRING "${GFORTRAN_VER_STR}")
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# message(STATUS "Detected gfortran version ${GFORTRAN_VERSION_STRING}")
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# unset(GFORTRAN_VER_STR)
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#
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# set(MATCH_REGEX "[^\t\n ]+[\t\n ]+")
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# set(REPLACE_REGEX "([^\t\n ]+)")
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#
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# # Find architecture for compiler
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# string(REGEX MATCH "Target: [^\t\n ]+"
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# GFORTRAN_ARCH_STR "${GFORTRAN_VERBOSE_STR}")
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# message(STATUS "Architecture string: ${GFORTRAN_ARCH_STR}")
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# string(REGEX REPLACE "Target: ([^\t\n ]+)" "\\1"
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# GFORTRAN_ARCH "${GFORTRAN_ARCH_STR}")
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# message(STATUS "Detected gfortran architecture: ${GFORTRAN_ARCH}")
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# unset(GFORTRAN_ARCH_STR)
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#
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# # Find install prefix, if it exists; if not, use default
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# string(REGEX MATCH "--prefix=[^\t\n ]+[\t\n ]+"
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# GFORTRAN_PREFIX_STR "${GFORTRAN_VERBOSE_STR}")
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# if(NOT GFORTRAN_PREFIX_STR)
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# message(STATUS "Detected default gfortran prefix")
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# set(GFORTRAN_PREFIX_DIR "/usr/local") # default prefix for gcc install
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# else()
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# string(REGEX REPLACE "--prefix=([^\t\n ]+)" "\\1"
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# GFORTRAN_PREFIX_DIR "${GFORTRAN_PREFIX_STR}")
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# endif()
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# message(STATUS "Detected gfortran prefix: ${GFORTRAN_PREFIX_DIR}")
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# unset(GFORTRAN_PREFIX_STR)
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#
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# # Find install exec-prefix, if it exists; if not, use default
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# string(REGEX MATCH "--exec-prefix=[^\t\n ]+[\t\n ]+" "\\1"
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# GFORTRAN_EXEC_PREFIX_STR "${GFORTRAN_VERBOSE_STR}")
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# if(NOT GFORTRAN_EXEC_PREFIX_STR)
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# message(STATUS "Detected default gfortran exec-prefix")
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# set(GFORTRAN_EXEC_PREFIX_DIR "${GFORTRAN_PREFIX_DIR}")
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# else()
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# string(REGEX REPLACE "--exec-prefix=([^\t\n ]+)" "\\1"
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# GFORTRAN_EXEC_PREFIX_DIR "${GFORTRAN_EXEC_PREFIX_STR}")
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# endif()
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# message(STATUS "Detected gfortran exec-prefix: ${GFORTRAN_EXEC_PREFIX_DIR}")
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# UNSET(GFORTRAN_EXEC_PREFIX_STR)
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#
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# # Find library directory and include directory, if library directory specified
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# string(REGEX MATCH "--libdir=[^\t\n ]+"
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# GFORTRAN_LIB_DIR_STR "${GFORTRAN_VERBOSE_STR}")
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# if(NOT GFORTRAN_LIB_DIR_STR)
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# message(STATUS "Found --libdir flag -- not found")
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# message(STATUS "Using default gfortran library & include directory paths")
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# set(GFORTRAN_LIBRARIES_DIR
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# "${GFORTRAN_EXEC_PREFIX_DIR}/lib/gcc/${GFORTRAN_ARCH}/${GFORTRAN_VERSION_STRING}")
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# string(CONCAT GFORTRAN_INCLUDE_DIR "${GFORTRAN_LIBRARIES_DIR}" "/include")
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# else()
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# message(STATUS "Found --libdir flag -- yes")
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# string(REGEX REPLACE "--libdir=([^\t\n ]+)" "\\1"
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# GFORTRAN_LIBRARIES_DIR "${GFORTRAN_LIB_DIR_STR}")
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# string(CONCAT GFORTRAN_INCLUDE_DIR "${GFORTRAN_LIBRARIES_DIR}" "/gcc/" "${GFORTRAN_ARCH}" "/" "${GFORTRAN_VERSION_STRING}" "/include")
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# endif()
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# message(STATUS "gfortran libraries path: ${GFORTRAN_LIBRARIES_DIR}")
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# message(STATUS "gfortran include path dir: ${GFORTRAN_INCLUDE_DIR}")
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# unset(GFORTRAN_LIB_DIR_STR)
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#
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# # There are lots of other build options for gcc & gfortran. For now, the
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# # options implemented above should cover a lot of common use cases.
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#
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# # Clean up be deleting the output string from "gfortran -v"
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# unset(GFORTRAN_VERBOSE_STR)
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#
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# # Find paths for libgfortran, libquadmath, libgomp
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# # libgomp needed for OpenMP support without Clang
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# find_library(LIBGFORTRAN_LIBRARIES NAMES gfortran libgfortran
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# HINTS ${GFORTRAN_LIBRARIES_DIR})
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# find_library(LIBQUADMATH_LIBRARIES NAMES quadmath libquadmath
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# HINTS ${GFORTRAN_LIBRARIES_DIR})
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# find_library(LIBGOMP_LIBRARIES NAMES gomp libgomp
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# HINTS ${GFORTRAN_LIBRARIES_DIR})
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#
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# # Find OpenMP headers
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# find_path(LIBGOMP_INCLUDE_DIR NAMES omp.h HINTS ${GFORTRAN_INCLUDE_DIR})
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#
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# else()
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# message(STATUS "CMAKE_Fortran_COMPILER_ID does not match 'GNU'!")
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# endif()
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#
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# include(FindPackageHandleStandardArgs)
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#
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# # Required: libgfortran, libquadmath, path for gfortran libraries
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# # Optional: libgomp, path for OpenMP headers, path for gcc/gfortran headers
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# find_package_handle_standard_args(GFortranLibs
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# REQUIRED_VARS LIBGFORTRAN_LIBRARIES LIBQUADMATH_LIBRARIES GFORTRAN_LIBRARIES_DIR
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# VERSION_VAR GFORTRAN_VERSION_STRING)
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#
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# if(GFORTRANLIBS_FOUND)
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# message(STATUS "Looking for gfortran libraries -- found")
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# message(STATUS "gfortran version: ${GFORTRAN_VERSION_STRING}")
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# else()
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# message(STATUS "Looking for gfortran libraries -- not found")
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# endif()
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#
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# mark_as_advanced(LIBGFORTRAN_LIBRARIES LIBQUADMATH_LIBRARIES
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# LIBGOMP_LIBRARIES LIBGOMP_INCLUDE_DIR
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# GFORTRAN_LIBRARIES_DIR GFORTRAN_INCLUDE_DIR)
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# # FindGFortranLIBS.cmake ends here
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enable_language(Fortran)
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if(CMAKE_Fortran_COMPILER_ID MATCHES "GNU")
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# Basically, call "gfortran -v" to dump compiler info to the string
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# GFORTRAN_VERBOSE_STR, which will be used to get necessary paths
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message(STATUS "Extracting library and header information by calling 'gfortran -v'...")
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execute_process(COMMAND "${CMAKE_Fortran_COMPILER}" "-v" ERROR_VARIABLE
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GFORTRAN_VERBOSE_STR RESULT_VARIABLE FLAG)
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# For debugging
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message(STATUS "'gfortran -v' returned:")
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message(STATUS "${GFORTRAN_VERBOSE_STR}")
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# Detect gfortran version
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string(REGEX MATCH "gcc version [^\t\n ]+" GFORTRAN_VER_STR "${GFORTRAN_VERBOSE_STR}")
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string(REGEX REPLACE "gcc version ([^\t\n ]+)" "\\1" GFORTRAN_VERSION_STRING "${GFORTRAN_VER_STR}")
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message(STATUS "Detected gfortran version ${GFORTRAN_VERSION_STRING}")
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unset(GFORTRAN_VER_STR)
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set(MATCH_REGEX "[^\t\n ]+[\t\n ]+")
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set(REPLACE_REGEX "([^\t\n ]+)")
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# Find architecture for compiler
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string(REGEX MATCH "Target: [^\t\n ]+"
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GFORTRAN_ARCH_STR "${GFORTRAN_VERBOSE_STR}")
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message(STATUS "Architecture string: ${GFORTRAN_ARCH_STR}")
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string(REGEX REPLACE "Target: ([^\t\n ]+)" "\\1"
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GFORTRAN_ARCH "${GFORTRAN_ARCH_STR}")
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message(STATUS "Detected gfortran architecture: ${GFORTRAN_ARCH}")
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unset(GFORTRAN_ARCH_STR)
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# Find install prefix, if it exists; if not, use default
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string(REGEX MATCH "--prefix=[^\t\n ]+[\t\n ]+"
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GFORTRAN_PREFIX_STR "${GFORTRAN_VERBOSE_STR}")
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if(NOT GFORTRAN_PREFIX_STR)
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message(STATUS "Detected default gfortran prefix")
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set(GFORTRAN_PREFIX_DIR "/usr/local") # default prefix for gcc install
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else()
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string(REGEX REPLACE "--prefix=([^\t\n ]+)" "\\1"
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GFORTRAN_PREFIX_DIR "${GFORTRAN_PREFIX_STR}")
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endif()
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message(STATUS "Detected gfortran prefix: ${GFORTRAN_PREFIX_DIR}")
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unset(GFORTRAN_PREFIX_STR)
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# Find install exec-prefix, if it exists; if not, use default
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string(REGEX MATCH "--exec-prefix=[^\t\n ]+[\t\n ]+" "\\1"
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GFORTRAN_EXEC_PREFIX_STR "${GFORTRAN_VERBOSE_STR}")
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if(NOT GFORTRAN_EXEC_PREFIX_STR)
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message(STATUS "Detected default gfortran exec-prefix")
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set(GFORTRAN_EXEC_PREFIX_DIR "${GFORTRAN_PREFIX_DIR}")
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else()
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string(REGEX REPLACE "--exec-prefix=([^\t\n ]+)" "\\1"
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GFORTRAN_EXEC_PREFIX_DIR "${GFORTRAN_EXEC_PREFIX_STR}")
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endif()
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message(STATUS "Detected gfortran exec-prefix: ${GFORTRAN_EXEC_PREFIX_DIR}")
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UNSET(GFORTRAN_EXEC_PREFIX_STR)
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# Find library directory and include directory, if library directory specified
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string(REGEX MATCH "--libdir=[^\t\n ]+"
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GFORTRAN_LIB_DIR_STR "${GFORTRAN_VERBOSE_STR}")
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if(NOT GFORTRAN_LIB_DIR_STR)
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message(STATUS "Found --libdir flag -- not found")
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message(STATUS "Using default gfortran library & include directory paths")
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set(GFORTRAN_LIBRARIES_DIR
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"${GFORTRAN_EXEC_PREFIX_DIR}/lib/gcc/${GFORTRAN_ARCH}/${GFORTRAN_VERSION_STRING}")
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string(CONCAT GFORTRAN_INCLUDE_DIR "${GFORTRAN_LIBRARIES_DIR}" "/include")
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else()
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message(STATUS "Found --libdir flag -- yes")
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string(REGEX REPLACE "--libdir=([^\t\n ]+)" "\\1"
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GFORTRAN_LIBRARIES_DIR "${GFORTRAN_LIB_DIR_STR}")
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string(CONCAT GFORTRAN_INCLUDE_DIR "${GFORTRAN_LIBRARIES_DIR}" "/gcc/" "${GFORTRAN_ARCH}" "/" "${GFORTRAN_VERSION_STRING}" "/include")
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endif()
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message(STATUS "gfortran libraries path: ${GFORTRAN_LIBRARIES_DIR}")
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message(STATUS "gfortran include path dir: ${GFORTRAN_INCLUDE_DIR}")
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unset(GFORTRAN_LIB_DIR_STR)
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# There are lots of other build options for gcc & gfortran. For now, the
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# options implemented above should cover a lot of common use cases.
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# Clean up be deleting the output string from "gfortran -v"
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unset(GFORTRAN_VERBOSE_STR)
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# Find paths for libgfortran, libquadmath, libgomp
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# libgomp needed for OpenMP support without Clang
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find_library(LIBGFORTRAN_LIBRARIES NAMES gfortran libgfortran
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HINTS ${GFORTRAN_LIBRARIES_DIR})
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find_library(LIBQUADMATH_LIBRARIES NAMES quadmath libquadmath
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HINTS ${GFORTRAN_LIBRARIES_DIR})
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find_library(LIBGOMP_LIBRARIES NAMES gomp libgomp
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HINTS ${GFORTRAN_LIBRARIES_DIR})
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# Find OpenMP headers
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find_path(LIBGOMP_INCLUDE_DIR NAMES omp.h HINTS ${GFORTRAN_INCLUDE_DIR})
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else()
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message(STATUS "CMAKE_Fortran_COMPILER_ID does not match 'GNU'!")
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endif()
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include(FindPackageHandleStandardArgs)
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# Required: libgfortran, libquadmath, path for gfortran libraries
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# Optional: libgomp, path for OpenMP headers, path for gcc/gfortran headers
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find_package_handle_standard_args(GFortranLibs
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REQUIRED_VARS LIBGFORTRAN_LIBRARIES LIBQUADMATH_LIBRARIES GFORTRAN_LIBRARIES_DIR
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VERSION_VAR GFORTRAN_VERSION_STRING)
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if(GFORTRANLIBS_FOUND)
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message(STATUS "Looking for gfortran libraries -- found")
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message(STATUS "gfortran version: ${GFORTRAN_VERSION_STRING}")
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else()
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message(STATUS "Looking for gfortran libraries -- not found")
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endif()
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mark_as_advanced(LIBGFORTRAN_LIBRARIES LIBQUADMATH_LIBRARIES
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LIBGOMP_LIBRARIES LIBGOMP_INCLUDE_DIR
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GFORTRAN_LIBRARIES_DIR GFORTRAN_INCLUDE_DIR)
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# FindGFortranLIBS.cmake ends here
|
||||
# if (NOT "$ENV{FC}" STREQUAL "")
|
||||
# set(FC "$ENV{FC}" CACHE INTERNAL "Got from environment variable")
|
||||
# set(CMAKE_Fortran_COMPILER "$ENV{FC}" CACHE INTERNAL "Got from environment variable")
|
||||
# set(GFORTRANLIBS_FOUND "1" CACHE INTERNAL "found environment variable")
|
||||
# endif()
|
||||
|
|
|
|||
|
|
@ -32,20 +32,28 @@
|
|||
# WCSLIB_LIBRARIES - the WCSLIB libraries
|
||||
# (identical to WCSLIB_LIBRARY)
|
||||
|
||||
# find paths
|
||||
if(NOT WCSLIB_FOUND)
|
||||
|
||||
find_path(WCSLIB_INCLUDE_DIR wcslib/wcs.h
|
||||
HINTS ${WCSLIB_ROOT_DIR} PATH_SUFFIXES include)
|
||||
find_library(WCSLIB_LIBRARY wcs
|
||||
HINTS ${WCSLIB_ROOT_DIR} PATH_SUFFIXES lib)
|
||||
if (NOT "$ENV{WCSLIB_ROOT_DIR}" STREQUAL "")
|
||||
set(WCSLIB_ROOT "$ENV{WCSLIB_ROOT_DIR}" CACHE INTERNAL "Got from environment variable")
|
||||
endif()
|
||||
|
||||
find_path(WCSLIB_INCLUDE wcslib/wcs.h
|
||||
HINTS ${WCSLIB_ROOT} PATH_SUFFIXES include)
|
||||
find_library(WCSLIB_LIB wcs
|
||||
HINTS ${WCSLIB_ROOT} PATH_SUFFIXES lib)
|
||||
find_library(M_LIBRARY m)
|
||||
mark_as_advanced(WCSLIB_INCLUDE_DIR WCSLIB_LIBRARY M_LIBRARY)
|
||||
mark_as_advanced(WCSLIB_INCLUDE WCSLIB_LIB M_LIBRARY)
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
find_package_handle_standard_args(WCSLIB DEFAULT_MSG
|
||||
WCSLIB_LIBRARY M_LIBRARY WCSLIB_INCLUDE_DIR)
|
||||
WCSLIB_LIB M_LIBRARY WCSLIB_INCLUDE)
|
||||
|
||||
set(WCSLIB_INCLUDE_DIRS ${WCSLIB_INCLUDE_DIR})
|
||||
set(WCSLIB_LIBRARIES ${WCSLIB_LIBRARY} ${M_LIBRARY})
|
||||
set(WCSLIB_INCLUDE_DIRS ${WCSLIB_INCLUDE})
|
||||
set(WCSLIB_LIBRARIES ${WCSLIB_LIB} ${M_LIBRARY})
|
||||
|
||||
set(WCSLIB_INCLUDE ${WCSLIB_INCLUDE})
|
||||
set(WCSLIB_LIB ${WCSLIB_LIB} ${M_LIBRARY})
|
||||
|
||||
endif(NOT WCSLIB_FOUND)
|
||||
|
|
|
|||
|
|
@ -1 +0,0 @@
|
|||
../MS/data.cpp
|
||||
File diff suppressed because it is too large
Load Diff
|
|
@ -1 +0,0 @@
|
|||
../MS/data.h
|
||||
|
|
@ -0,0 +1,174 @@
|
|||
/*
|
||||
*
|
||||
Copyright (C) 2006-2008 Sarod Yatawatta <sarod@users.sf.net>
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
$Id$
|
||||
*/
|
||||
|
||||
#ifndef __DATA_H__
|
||||
#define __DATA_H__
|
||||
#include <unistd.h>
|
||||
#include <stdio.h>
|
||||
#include <iostream>
|
||||
#include <casacore/ms/MeasurementSets/MSIter.h>
|
||||
#include <casacore/tables/Tables/Table.h>
|
||||
#include <casacore/tables/Tables/TableVector.h>
|
||||
#include <casacore/tables/Tables/TableRecord.h>
|
||||
#include <casacore/tables/Tables/TableColumn.h>
|
||||
#include <casacore/tables/Tables/TableIter.h>
|
||||
#include <casacore/tables/Tables/ScalarColumn.h>
|
||||
#include <casacore/tables/Tables/ArrayColumn.h>
|
||||
#include <casacore/casa/Arrays/Array.h>
|
||||
#include <casacore/casa/Arrays/Cube.h>
|
||||
#include <fstream>
|
||||
#include <math.h>
|
||||
#include <complex>
|
||||
|
||||
|
||||
using namespace casacore;
|
||||
|
||||
namespace Data
|
||||
{
|
||||
|
||||
struct IOData {
|
||||
int N; /* no of stations */
|
||||
int Nbase; /* baselines, exclude autocorrelations */
|
||||
int tilesz;
|
||||
int Nchan; /* total no of channels */
|
||||
int Nms; /* no. of MS */
|
||||
int *NchanMS; /* total channels per MS : Nms x 1 vector */
|
||||
double deltat; /* integration time (s) */
|
||||
int totalt; /* total no of time slots */
|
||||
double ra0; /* phase center */
|
||||
double dec0; /* phase center */
|
||||
double *u; /* uvw coords, size Nbase*tilesz x 1 */
|
||||
double *v;
|
||||
double *w;
|
||||
double *x; /* averaged data, size Nbase*8*tilez x 1
|
||||
ordered by XX(re,im),XY(re,im),YX(re,im),YY(re,im), baseline, timeslots */
|
||||
double *xo; /* unaveraged data, size Nbase*8*tilesz*Nchan x 1
|
||||
ordered by XX(re,im),XY(re,im),YX(re,im),YY(re,im), baseline, timeslots, channel */
|
||||
double *freqs; /* channel freqs, size Nchan x 1 */
|
||||
double freq0; /* averaged freq */
|
||||
double *flag; /* double for conforming with old routines size Nbase*tilesz x 1 */
|
||||
double deltaf; /* total bandwidth for freq. smearing */
|
||||
|
||||
double fratio; /* flagged data ratio = flagged/total, not counting data excluded from uv cut */
|
||||
/* if 1, all usable data are flagged */
|
||||
};
|
||||
|
||||
/* Station beam info */
|
||||
struct LBeam {
|
||||
double *time_utc; /* time coord UTC (s), size tileszx1,
|
||||
convert from MJD (s) to JD (days) */
|
||||
int *Nelem; /* no of elements in each station, size Nx1 */
|
||||
/* position (ITRF) of stations (m)
|
||||
later changed to logitude,latitude,height (rad,rad,m) */
|
||||
double *sx; /* x: size Nx1 */
|
||||
double *sy; /* y: ... */
|
||||
double *sz; /* z: ... */
|
||||
/* x,y,z coords of elements, projected, converted to ITRF (m) */
|
||||
double **xx; /* x coord pointer, size Nx1, each *x: x coord of station, size Nelem[]x1 */
|
||||
double **yy; /* y ... */
|
||||
double **zz; /* z ... */
|
||||
/* pointing center of beams (only one) (could be different from phase center) */
|
||||
double p_ra0;
|
||||
double p_dec0;
|
||||
};
|
||||
|
||||
|
||||
/* read Auxilliary info and setup memory */
|
||||
void readAuxData(const char *fname, IOData *data);
|
||||
void readAuxData(const char *fname, IOData *data, LBeam *binfo);
|
||||
|
||||
void readAuxDataList(vector<string> msnames, IOData *data);
|
||||
|
||||
void readMSlist(char *fname, vector<string> *msnames);
|
||||
/* load data using MS Iterator */
|
||||
void loadData(Table t, IOData iodata, double *fratio);
|
||||
void loadData(Table t, IOData iodata, LBeam binfo, double *fratio);
|
||||
|
||||
void loadDataList(vector<MSIter*> msitr, Data::IOData iodata, double *fratio);
|
||||
/* write back data using MS Iterator */
|
||||
void writeData(Table t, IOData iodata);
|
||||
void writeDataList(vector<MSIter*> msitr, IOData iodata);
|
||||
void freeData(IOData data);
|
||||
void freeData(IOData data, LBeam binfo);
|
||||
|
||||
extern int numChannels;
|
||||
extern unsigned long int numRows;
|
||||
|
||||
struct float2 {
|
||||
float x,y;
|
||||
};
|
||||
|
||||
|
||||
extern char *TableName; /* MS name */
|
||||
extern char *MSlist; /* text file with MS names */
|
||||
extern char *MSpattern; /* pattern to match all MS names used in calibration */
|
||||
extern float min_uvcut;
|
||||
extern float max_uvcut;
|
||||
extern float max_uvtaper;
|
||||
extern casacore::String DataField; /* input column DATA/CORRECTED_DATA */
|
||||
extern casacore::String OutField; /* output column DATA/CORRECTED_DATA */
|
||||
extern int TileSize; //Tile size
|
||||
extern int Nt; /* no of worker threads */
|
||||
extern char *SkyModel; /* sky model file */
|
||||
extern char *Clusters; /* cluster file */
|
||||
extern int format; /* sky model format 0: LSM, 1: LSM with 3 order spec idx*/
|
||||
|
||||
/* sagecal paramters */
|
||||
extern int max_emiter;
|
||||
extern int max_iter;
|
||||
extern int max_lbfgs;
|
||||
extern int lbfgs_m;
|
||||
extern int gpu_threads;
|
||||
extern int linsolv;
|
||||
extern int solver_mode;
|
||||
extern int ccid;
|
||||
extern double rho;
|
||||
extern char *solfile;
|
||||
extern char *initsolfile;
|
||||
extern char *ignorefile;
|
||||
extern double nulow,nuhigh;
|
||||
extern int randomize;
|
||||
extern int whiten;
|
||||
extern int DoSim; /* if 1, simulation mode */
|
||||
extern int doChan; /* if 1, solve for each channel in multi channel data */
|
||||
extern int doBeam; /* if 1, predict (LOFAR) beam array factor */
|
||||
extern int DoDiag; /* if >0, enables diagnostics (Leverage) 1: write leverage as output (no residual), 2: only calculate fractions of leverage/noise */
|
||||
extern int phaseOnly; /* if >0, and if any correction is done, extract phase and do phase only correction */
|
||||
|
||||
/* distributed sagecal parameters */
|
||||
extern int Nadmm; /* ADMM iterations >=1 */
|
||||
extern int Npoly; /* polynomial order >=1 */
|
||||
extern int PolyType; /* what kind on polynomials to use 0,1,2,3 */
|
||||
extern double admm_rho; /* regularization */
|
||||
extern char *admm_rho_file; /* text file for regularization of each cluster */
|
||||
extern int aadmm; /* if >0, enable adaptive update of rho */
|
||||
/* for debugging, upper limit on time slots */
|
||||
extern int Nmaxtime;
|
||||
/* skipping initial timeslots */
|
||||
extern int Nskip;
|
||||
extern int verbose; /* if >0, enable verbose output */
|
||||
extern int mdl; /* if given, calculate AIC/MDL for different poly configs and find minimum */
|
||||
extern int GPUpredict; /* if given, use GPU for model calculation */
|
||||
extern int heapsize; /* heap size in GPU (MB), for using malloc() */
|
||||
/* for client server mode */
|
||||
extern int servermode; /* 0: client, 1: server, else default operation */
|
||||
extern char *servername; /* server host name or ip address */
|
||||
extern char *portnumber; /* which port number to use for communication */
|
||||
}
|
||||
#endif //__DATA_H__
|
||||
Loading…
Reference in New Issue