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Merge pull request #3 from zweien/dev 

bump2version, blackstyle, ci
This commit is contained in:
weipengOO98 2021-07-14 15:49:45 +08:00 committed by GitHub
parent f665364ef0 2f76e62821
commit d130c6f6be
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38 changed files with 2534 additions and 1378 deletions
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24
.bumpversion.cfg Normal file
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@ -0,0 +1,24 @@
[bumpversion]
current_version = 0.0.1-rc1
commit = True
tag = True
tag_name = v{new_version}
parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)([-](?P<release>(dev|rc))+(?P<build>\d+))?
serialize =
{major}.{minor}.{patch}-{release}{build}
{major}.{minor}.{patch}
[bumpversion:part:release]
first_value = dev
optional_value = ga
values =
dev
rc
ga
[bumpversion:part:build]
first_value = 1
[bumpversion:file:setup.py]
[bumpversion:file:docs/conf.py]

2
.flake8
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@ -1,2 +1,2 @@
[flake8]
ignore = E203, W503, E501, E231, F401, F403
ignore = E203, W503, E501, E231, F401, F403, E722, E731

50
.github/workflows/docker.yml vendored Normal file
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@ -0,0 +1,50 @@
name: docker-build-push
on:
push:
pull_request:
branches: [master]
release:
types: [published, created, edited]
jobs:
docker:
runs-on: ubuntu-latest
steps:
-
name: Set up QEMU
uses: docker/setup-qemu-action@v1
-
name: Set up Docker Buildx
uses: docker/setup-buildx-action@v1
-
name: Login to DockerHub
uses: docker/login-action@v1
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_TOKEN }}
-
name: Build and push
id: docker_build
uses: docker/build-push-action@v2
with:
push: true
tags: ${{ secrets.DOCKERHUB_USERNAME }}/idrlnet:latest
-
name: Image digest
run: echo ${{ steps.docker_build.outputs.digest }}
-
name: Get release version
if: github.event_name == 'release'
id: get_version
run: echo "::set-output name=RELEASE_VERSION::${{ github.event.release.tag_name }}"
-
name: Publish Releases to Dockerhub
if: github.event_name == 'release'
uses: docker/build-push-action@v2
with:
push: true
tags: ${{ secrets.DOCKERHUB_USERNAME }}/idrlnet:${{ steps.get_version.outputs.RELEASE_VERSION }}

38
.github/workflows/python-package.yml vendored Normal file
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@ -0,0 +1,38 @@
# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Python package
on:
- push
- pull_request
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: [3.7, 3.8, 3.9]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest
pip install -e .
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
python examples/simple_poisson/simple_poisson.py

32
Dockerfile
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@ -1,27 +1,7 @@
FROM pytorch/pytorch:1.7.0-cuda11.0-cudnn8-devel
RUN apt-get update && apt-get install -y openssh-server nfs-common && \
echo "PermitRootLogin yes" >> /etc/ssh/sshd_config && \
(echo '123456'; echo '123456') | passwd root
RUN pip install -i https://pypi.mirrors.ustc.edu.cn/simple/ transforms3d \
typing \
numpy \
keras \
h5py \
pandas \
zipfile36 \
scikit-optimize \
pytest \
sphinx \
matplotlib \
myst_parser \
sphinx_rtd_theme==0.5.2 \
tensorboard==2.4.1 \
sympy==1.5.1 \
pyevtk==1.1.1 \
flask==1.1.2 \
requests==2.25.0 \
networkx==2.5.1
COPY . /idrlnet/
RUN cd /idrlnet && pip install -e .
ENTRYPOINT service ssh start && bash
LABEL maintainer="pengwei"
WORKDIR /idrlnet
COPY requirements.txt ./
RUN pip install -r requirements.txt
COPY . .
RUN pip install -e .

30
docs/conf.py
View File

@ -13,16 +13,16 @@
import os
import sys
sys.path.insert(0, os.path.abspath('..'))
sys.path.insert(0, os.path.abspath(".."))
# -- Project information -----------------------------------------------------
project = 'idrlnet'
copyright = '2021, IDRL'
author = 'IDRL'
project = "idrlnet"
copyright = "2021, IDRL"
author = "IDRL"
# The full version, including alpha/beta/rc tags
release = '0.0.1-alpha'
release = "0.0.1-rc1"
# -- General configuration ---------------------------------------------------
@ -34,37 +34,37 @@ extensions = [
"sphinx.ext.mathjax",
"sphinx.ext.napoleon",
"sphinx.ext.viewcode",
'myst_parser',
'sphinx.ext.autosectionlabel',
"myst_parser",
"sphinx.ext.autosectionlabel",
]
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
templates_path = ["_templates"]
source_suffix = {
'.rst': 'restructuredtext',
'.txt': 'markdown',
'.md': 'markdown',
".rst": "restructuredtext",
".txt": "markdown",
".md": "markdown",
}
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path.
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
# -- Options for HTML output -------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'
html_theme = "sphinx_rtd_theme"
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
html_static_path = ["_static"]
# for MarkdownParser
from sphinx_markdown_parser.parser import MarkdownParser
from sphinx_markdown_parser.parser import MarkdownParser # noqa
# def setup(app):

64
examples/Volterra_IDE/volterra_ide.py
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@ -3,9 +3,9 @@ import sympy as sp
import numpy as np
import matplotlib.pyplot as plt
x = sp.Symbol('x')
s = sp.Symbol('s')
f = sp.Function('f')(x)
x = sp.Symbol("x")
s = sp.Symbol("s")
f = sp.Function("f")(x)
geo = sc.Line1D(0, 5)
@ -19,43 +19,49 @@ def interior():
@sc.datanode
def init():
points = geo.sample_boundary(1, sieve=sp.Eq(x, 0))
points['lambda_f'] = 1000 * np.ones_like(points['x'])
constraints = {'f': 1}
points["lambda_f"] = 1000 * np.ones_like(points["x"])
constraints = {"f": 1}
return points, constraints
@sc.datanode(name='InteriorInfer')
@sc.datanode(name="InteriorInfer")
def infer():
points = {'x': np.linspace(0, 5, 1000).reshape(-1, 1)}
points = {"x": np.linspace(0, 5, 1000).reshape(-1, 1)}
return points, {}
netnode = sc.get_net_node(inputs=('x',), outputs=('f',), name='net')
exp_lhs = sc.ExpressionNode(expression=f.diff(x) + f, name='lhs')
netnode = sc.get_net_node(inputs=("x",), outputs=("f",), name="net")
exp_lhs = sc.ExpressionNode(expression=f.diff(x) + f, name="lhs")
fs = sp.Symbol('fs')
exp_rhs = sc.Int1DNode(expression=sp.exp(s - x) * fs, var=s, lb=0, ub=x, expression_name='rhs',
funs={'fs': {'eval': netnode,
'input_map': {'x': 's'},
'output_map': {'f': 'fs'}}},
degree=10)
diff = sc.Difference(T='lhs', S='rhs', dim=1, time=False)
fs = sp.Symbol("fs")
exp_rhs = sc.Int1DNode(
expression=sp.exp(s - x) * fs,
var=s,
lb=0,
ub=x,
expression_name="rhs",
funs={"fs": {"eval": netnode, "input_map": {"x": "s"}, "output_map": {"f": "fs"}}},
degree=10,
)
diff = sc.Difference(T="lhs", S="rhs", dim=1, time=False)
solver = sc.Solver(sample_domains=(interior(), init(), infer()),
netnodes=[netnode],
pdes=[exp_lhs, exp_rhs, diff],
loading=True,
max_iter=3000)
solver = sc.Solver(
sample_domains=(interior(), init(), infer()),
netnodes=[netnode],
pdes=[exp_lhs, exp_rhs, diff],
loading=True,
max_iter=3000,
)
solver.solve()
points = solver.infer_step({'InteriorInfer': ['x', 'f']})
num_x = points['InteriorInfer']['x'].detach().cpu().numpy().ravel()
num_f = points['InteriorInfer']['f'].detach().cpu().numpy().ravel()
points = solver.infer_step({"InteriorInfer": ["x", "f"]})
num_x = points["InteriorInfer"]["x"].detach().cpu().numpy().ravel()
num_f = points["InteriorInfer"]["f"].detach().cpu().numpy().ravel()
fig = plt.figure(figsize=(8,4))
fig = plt.figure(figsize=(8, 4))
plt.plot(num_x, num_f)
plt.plot(num_x, np.exp(-num_x) * np.cosh(num_x))
plt.xlabel('x')
plt.ylabel('y')
plt.legend(['Prediction', 'Exact'])
plt.savefig('ide.png', dpi=1000, bbox_inches='tight')
plt.xlabel("x")
plt.ylabel("y")
plt.legend(["Prediction", "Exact"])
plt.savefig("ide.png", dpi=1000, bbox_inches="tight")
plt.show()

188
examples/allen_cahn/allen_cahn.py
View File

@ -8,16 +8,16 @@ import os
import torch
# parameter phase
L = 1.
L = 1.0
# define geometry
geo = sc.Line1D(-1.0, 1.0)
# define sympy varaibles to parametize domain curves
t_symbol = Symbol('t')
x = Symbol('x')
u = sp.Function('u')(x, t_symbol)
up = sp.Function('up')(x, t_symbol)
t_symbol = Symbol("t")
x = Symbol("x")
u = sp.Function("u")(x, t_symbol)
up = sp.Function("up")(x, t_symbol)
time_range = {t_symbol: (0, L)}
@ -25,52 +25,62 @@ time_range = {t_symbol: (0, L)}
@sc.datanode
class AllenInit(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return geo.sample_interior(density=300, param_ranges={t_symbol: 0.0}), \
{'u': x ** 2 * sp.cos(sp.pi * x), 'lambda_u': 100}
return geo.sample_interior(density=300, param_ranges={t_symbol: 0.0}), {
"u": x ** 2 * sp.cos(sp.pi * x),
"lambda_u": 100,
}
@sc.datanode
class AllenBc(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return geo.sample_boundary(density=200, sieve=sp.Eq(x, -1), param_ranges=time_range), \
{'difference_u_up': 0,
'difference_diff_u_diff_up': 0,
}
return geo.sample_boundary(
density=200, sieve=sp.Eq(x, -1), param_ranges=time_range
), {
"difference_u_up": 0,
"difference_diff_u_diff_up": 0,
}
@sc.datanode(name='allen_domain')
@sc.datanode(name="allen_domain")
class AllenEq(sc.SampleDomain):
def __init__(self):
self.points = geo.sample_interior(density=2000, param_ranges=time_range, low_discrepancy=True)
self.points = geo.sample_interior(
density=2000, param_ranges=time_range, low_discrepancy=True
)
def sampling(self, *args, **kwargs):
constraints = {'AllenCahn_u': 0}
constraints = {"AllenCahn_u": 0}
return self.points, constraints
@sc.datanode(name='data_evaluate')
@sc.datanode(name="data_evaluate")
class AllenPointsInference(sc.SampleDomain):
def __init__(self):
self.points = geo.sample_interior(density=5000, param_ranges=time_range, low_discrepancy=True)
self.points = geo.sample_interior(
density=5000, param_ranges=time_range, low_discrepancy=True
)
self.points = sc.Variables(self.points).to_torch_tensor_()
self.constraints = {'AllenCahn_u': torch.zeros_like(self.points['x'])}
self.constraints = {"AllenCahn_u": torch.zeros_like(self.points["x"])}
def sampling(self, *args, **kwargs):
return self.points, self.constraints
@sc.datanode(name='re_sampling_domain')
@sc.datanode(name="re_sampling_domain")
class SpaceAdaptiveSampling(sc.SampleDomain):
def __init__(self):
self.points = geo.sample_interior(density=100, param_ranges=time_range, low_discrepancy=True)
self.points = geo.sample_interior(
density=100, param_ranges=time_range, low_discrepancy=True
)
self.points = sc.Variables(self.points).to_torch_tensor_()
self.constraints = {'AllenCahn_u': torch.zeros_like(self.points['x'])}
self.constraints = {"AllenCahn_u": torch.zeros_like(self.points["x"])}
def sampling(self, *args, **kwargs):
return self.points, self.constraints
@sc.datanode(name='allen_test')
@sc.datanode(name="allen_test")
def generate_plot_data():
x = np.linspace(-1.0, 1.0, 100)
t = np.linspace(0, 1.0, 100)
@ -82,76 +92,122 @@ def generate_plot_data():
# computational node phase
net_u = sc.MLP([2, 128, 128, 128, 128, 2], activation=sc.Activation.tanh)
net_u = sc.NetNode(inputs=('x', 't',), outputs=('u',), name='net1', net=net_u)
xp = sc.ExpressionNode(name='xp', expression=x + 2)
get_tilde_u = sc.get_shared_net_node(net_u, inputs=('xp', 't',), outputs=('up',), name='net2', arch='mlp')
net_u = sc.NetNode(
inputs=(
"x",
"t",
),
outputs=("u",),
name="net1",
net=net_u,
)
xp = sc.ExpressionNode(name="xp", expression=x + 2)
get_tilde_u = sc.get_shared_net_node(
net_u,
inputs=(
"xp",
"t",
),
outputs=("up",),
name="net2",
arch="mlp",
)
diff_u = sc.ExpressionNode(expression=u.diff(x), name='diff_u')
diff_up = sc.ExpressionNode(expression=up.diff(x), name='diff_up')
diff_u = sc.ExpressionNode(expression=u.diff(x), name="diff_u")
diff_up = sc.ExpressionNode(expression=up.diff(x), name="diff_up")
pde = sc.AllenCahnNode(u='u', gamma_1=0.0001, gamma_2=5)
pde = sc.AllenCahnNode(u="u", gamma_1=0.0001, gamma_2=5)
boundary_up = sc.Difference(T='diff_u', S='diff_up')
boundary_u = sc.Difference(T='u', S='up')
boundary_up = sc.Difference(T="diff_u", S="diff_up")
boundary_u = sc.Difference(T="u", S="up")
# Receiver hook phase
class SpaceAdaptiveReceiver(sc.Receiver):
def receive_notify(self, solver, message):
if sc.Signal.TRAIN_PIPE_END in message.keys() and solver.global_step % 1000 == 0:
sc.logger.info('space adaptive sampling...')
results = solver.infer_step({'data_evaluate': ['x', 't', 'sdf', 'AllenCahn_u']})
residual_data = results['data_evaluate']['AllenCahn_u'].detach().cpu().numpy().ravel()
if (
sc.Signal.TRAIN_PIPE_END in message.keys()
and solver.global_step % 1000 == 0
):
sc.logger.info("space adaptive sampling...")
results = solver.infer_step(
{"data_evaluate": ["x", "t", "sdf", "AllenCahn_u"]}
)
residual_data = (
results["data_evaluate"]["AllenCahn_u"].detach().cpu().numpy().ravel()
)
# sort the points by residual loss
index = np.argsort(-1. * np.abs(residual_data))[:200]
_points = {key: values[index].detach().cpu().numpy() for key, values in results['data_evaluate'].items()}
_points.pop('AllenCahn_u')
_points['area'] = np.zeros_like(_points['sdf']) + (1.0 / 200)
solver.set_domain_parameter('re_sampling_domain', {'points': _points})
index = np.argsort(-1.0 * np.abs(residual_data))[:200]
_points = {
key: values[index].detach().cpu().numpy()
for key, values in results["data_evaluate"].items()
}
_points.pop("AllenCahn_u")
_points["area"] = np.zeros_like(_points["sdf"]) + (1.0 / 200)
solver.set_domain_parameter("re_sampling_domain", {"points": _points})
class PostProcessReceiver(sc.Receiver):
def __init__(self):
if not os.path.exists('image'):
os.mkdir('image')
if not os.path.exists("image"):
os.mkdir("image")
def receive_notify(self, solver, message):
if sc.Signal.TRAIN_PIPE_END in message.keys() and solver.global_step % 1000 == 1:
sc.logger.info('Post Processing...')
points = s.infer_step({'allen_test': ['x', 't', 'u']})
triang_total = tri.Triangulation(points['allen_test']['t'].detach().cpu().numpy().ravel(),
points['allen_test']['x'].detach().cpu().numpy().ravel(), )
plt.tricontourf(triang_total, points['allen_test']['u'].detach().cpu().numpy().ravel(), 100, vmin=-1,
vmax=1)
if (
sc.Signal.TRAIN_PIPE_END in message.keys()
and solver.global_step % 1000 == 1
):
sc.logger.info("Post Processing...")
points = s.infer_step({"allen_test": ["x", "t", "u"]})
triang_total = tri.Triangulation(
points["allen_test"]["t"].detach().cpu().numpy().ravel(),
points["allen_test"]["x"].detach().cpu().numpy().ravel(),
)
plt.tricontourf(
triang_total,
points["allen_test"]["u"].detach().cpu().numpy().ravel(),
100,
vmin=-1,
vmax=1,
)
tc_bar = plt.colorbar()
tc_bar.ax.tick_params(labelsize=12)
_points = solver.get_domain_parameter('re_sampling_domain', 'points')
if not isinstance(_points['t'], torch.Tensor):
plt.scatter(_points['t'].ravel(), _points['x'].ravel(), marker='x', s=8)
_points = solver.get_domain_parameter("re_sampling_domain", "points")
if not isinstance(_points["t"], torch.Tensor):
plt.scatter(_points["t"].ravel(), _points["x"].ravel(), marker="x", s=8)
else:
plt.scatter(_points['t'].detach().cpu().numpy().ravel(),
_points['x'].detach().cpu().numpy().ravel(), marker='x', s=8)
plt.scatter(
_points["t"].detach().cpu().numpy().ravel(),
_points["x"].detach().cpu().numpy().ravel(),
marker="x",
s=8,
)
plt.xlabel('$t$')
plt.ylabel('$x$')
plt.title('$u(x,t)$')
plt.savefig(f'image/result_{solver.global_step}.png')
plt.xlabel("$t$")
plt.ylabel("$x$")
plt.title("$u(x,t)$")
plt.savefig(f"image/result_{solver.global_step}.png")
plt.show()
# Solver phase
s = sc.Solver(sample_domains=(AllenInit(),
AllenBc(),
AllenEq(),
AllenPointsInference(),
SpaceAdaptiveSampling(),
generate_plot_data()),
netnodes=[net_u, get_tilde_u],
pdes=[pde, xp, diff_up, diff_u, boundary_up, boundary_u],
max_iter=60000,
loading=True)
s = sc.Solver(
sample_domains=(
AllenInit(),
AllenBc(),
AllenEq(),
AllenPointsInference(),
SpaceAdaptiveSampling(),
generate_plot_data(),
),
netnodes=[net_u, get_tilde_u],
pdes=[pde, xp, diff_up, diff_u, boundary_up, boundary_u],
max_iter=60000,
loading=True,
)
s.register_receiver(SpaceAdaptiveReceiver())
s.register_receiver(PostProcessReceiver())

77
examples/burgers_equation/burgers_equation.py
View File

@ -4,63 +4,82 @@ import matplotlib.pyplot as plt
import matplotlib.tri as tri
import idrlnet.shortcut as sc
x = Symbol('x')
t_symbol = Symbol('t')
x = Symbol("x")
t_symbol = Symbol("t")
time_range = {t_symbol: (0, 1)}
geo = sc.Line1D(-1., 1.)
geo = sc.Line1D(-1.0, 1.0)
@sc.datanode(name='burgers_equation')
@sc.datanode(name="burgers_equation")
def interior_domain():
points = geo.sample_interior(10000, bounds={x: (-1., 1.)}, param_ranges=time_range)
constraints = {'burgers_u': 0}
points = geo.sample_interior(
10000, bounds={x: (-1.0, 1.0)}, param_ranges=time_range
)
constraints = {"burgers_u": 0}
return points, constraints
@sc.datanode(name='t_boundary')
@sc.datanode(name="t_boundary")
def init_domain():
points = geo.sample_interior(100, param_ranges={t_symbol: 0.0})
constraints = sc.Variables({'u': -sin(math.pi * x)})
constraints = sc.Variables({"u": -sin(math.pi * x)})
return points, constraints
@sc.datanode(name="x_boundary")
def boundary_domain():
points = geo.sample_boundary(100, param_ranges=time_range)
constraints = sc.Variables({'u': 0})
constraints = sc.Variables({"u": 0})
return points, constraints
net = sc.get_net_node(inputs=('x', 't',), outputs=('u',), name='net1', arch=sc.Arch.mlp)
pde = sc.BurgersNode(u='u', v=0.01 / math.pi)
s = sc.Solver(sample_domains=(interior_domain(), init_domain(), boundary_domain()),
netnodes=[net], pdes=[pde], max_iter=4000)
net = sc.get_net_node(
inputs=(
"x",
"t",
),
outputs=("u",),
name="net1",
arch=sc.Arch.mlp,
)
pde = sc.BurgersNode(u="u", v=0.01 / math.pi)
s = sc.Solver(
sample_domains=(interior_domain(), init_domain(), boundary_domain()),
netnodes=[net],
pdes=[pde],
max_iter=4000,
)
s.solve()
coord = s.infer_step({'burgers_equation': ['x', 't', 'u'], 't_boundary': ['x', 't'],
'x_boundary': ['x', 't']})
num_x = coord['burgers_equation']['x'].cpu().detach().numpy().ravel()
num_t = coord['burgers_equation']['t'].cpu().detach().numpy().ravel()
num_u = coord['burgers_equation']['u'].cpu().detach().numpy().ravel()
coord = s.infer_step(
{
"burgers_equation": ["x", "t", "u"],
"t_boundary": ["x", "t"],
"x_boundary": ["x", "t"],
}
)
num_x = coord["burgers_equation"]["x"].cpu().detach().numpy().ravel()
num_t = coord["burgers_equation"]["t"].cpu().detach().numpy().ravel()
num_u = coord["burgers_equation"]["u"].cpu().detach().numpy().ravel()
init_x = coord['t_boundary']['x'].cpu().detach().numpy().ravel()
init_t = coord['t_boundary']['t'].cpu().detach().numpy().ravel()
boundary_x = coord['x_boundary']['x'].cpu().detach().numpy().ravel()
boundary_t = coord['x_boundary']['t'].cpu().detach().numpy().ravel()
init_x = coord["t_boundary"]["x"].cpu().detach().numpy().ravel()
init_t = coord["t_boundary"]["t"].cpu().detach().numpy().ravel()
boundary_x = coord["x_boundary"]["x"].cpu().detach().numpy().ravel()
boundary_t = coord["x_boundary"]["t"].cpu().detach().numpy().ravel()
triang_total = tri.Triangulation(num_t.flatten(), num_x.flatten())
u_pre = num_u.flatten()
fig = plt.figure(figsize=(15, 5))
ax1 = fig.add_subplot(221)
tcf = ax1.tricontourf(triang_total, u_pre, 100, cmap='jet')
tcf = ax1.tricontourf(triang_total, u_pre, 100, cmap="jet")
tc_bar = plt.colorbar(tcf)
tc_bar.ax.tick_params(labelsize=10)
ax1.set_xlabel('$t$')
ax1.set_ylabel('$x$')
ax1.set_title('$u(x,t)$')
ax1.scatter(init_t, init_x, c='black', marker='x', s=8)
ax1.scatter(boundary_t, boundary_x, c='black', marker='x', s=8)
ax1.set_xlabel("$t$")
ax1.set_ylabel("$x$")
ax1.set_title("$u(x,t)$")
ax1.scatter(init_t, init_x, c="black", marker="x", s=8)
ax1.scatter(boundary_t, boundary_x, c="black", marker="x", s=8)
plt.xlim(0, 1)
plt.ylim(-1, 1)
plt.savefig('Burgers.png', dpi=500, bbox_inches='tight', pad_inches=0.02)
plt.savefig("Burgers.png", dpi=500, bbox_inches="tight", pad_inches=0.02)

67
examples/euler_beam/euler_beam.py
View File

@ -3,59 +3,68 @@ import sympy as sp
import numpy as np
import idrlnet.shortcut as sc
x = sp.symbols('x')
x = sp.symbols("x")
Line = sc.Line1D(0, 1)
y = sp.Function('y')(x)
y = sp.Function("y")(x)
@sc.datanode(name='interior')
@sc.datanode(name="interior")
class Interior(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return Line.sample_interior(1000), {'dddd_y': 0}
return Line.sample_interior(1000), {"dddd_y": 0}
@sc.datanode(name='left_boundary1')
@sc.datanode(name="left_boundary1")
class LeftBoundary1(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return Line.sample_boundary(100, sieve=(sp.Eq(x, 0))), {'y': 0}
return Line.sample_boundary(100, sieve=(sp.Eq(x, 0))), {"y": 0}
@sc.datanode(name='left_boundary2')
@sc.datanode(name="left_boundary2")
class LeftBoundary2(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return Line.sample_boundary(100, sieve=(sp.Eq(x, 0))), {'d_y': 0}
return Line.sample_boundary(100, sieve=(sp.Eq(x, 0))), {"d_y": 0}
@sc.datanode(name='right_boundary1')
@sc.datanode(name="right_boundary1")
class RightBoundary1(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return Line.sample_boundary(100, sieve=(sp.Eq(x, 1))), {'dd_y': 0}
return Line.sample_boundary(100, sieve=(sp.Eq(x, 1))), {"dd_y": 0}
@sc.datanode(name='right_boundary2')
@sc.datanode(name="right_boundary2")
class RightBoundary2(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return Line.sample_boundary(100, sieve=(sp.Eq(x, 1))), {'ddd_y': 0}
return Line.sample_boundary(100, sieve=(sp.Eq(x, 1))), {"ddd_y": 0}
@sc.datanode(name='infer')
@sc.datanode(name="infer")
class Infer(sc.SampleDomain):
def sampling(self, *args, **kwargs):
return {'x': np.linspace(0, 1, 1000).reshape(-1, 1)}, {}
return {"x": np.linspace(0, 1, 1000).reshape(-1, 1)}, {}
net = sc.get_net_node(inputs=('x',), outputs=('y',), name='net', arch=sc.Arch.mlp)
net = sc.get_net_node(inputs=("x",), outputs=("y",), name="net", arch=sc.Arch.mlp)
pde1 = sc.ExpressionNode(name='dddd_y', expression=y.diff(x).diff(x).diff(x).diff(x) + 1)
pde2 = sc.ExpressionNode(name='d_y', expression=y.diff(x))
pde3 = sc.ExpressionNode(name='dd_y', expression=y.diff(x).diff(x))
pde4 = sc.ExpressionNode(name='ddd_y', expression=y.diff(x).diff(x).diff(x))
pde1 = sc.ExpressionNode(
name="dddd_y", expression=y.diff(x).diff(x).diff(x).diff(x) + 1
)
pde2 = sc.ExpressionNode(name="d_y", expression=y.diff(x))
pde3 = sc.ExpressionNode(name="dd_y", expression=y.diff(x).diff(x))
pde4 = sc.ExpressionNode(name="ddd_y", expression=y.diff(x).diff(x).diff(x))
solver = sc.Solver(
sample_domains=(Interior(), LeftBoundary1(), LeftBoundary2(), RightBoundary1(), RightBoundary2()),
sample_domains=(
Interior(),
LeftBoundary1(),
LeftBoundary2(),
RightBoundary1(),
RightBoundary2(),
),
netnodes=[net],
pdes=[pde1, pde2, pde3, pde4],
max_iter=2000)
max_iter=2000,
)
solver.solve()
@ -65,14 +74,14 @@ def exact(x):
solver.sample_domains = (Infer(),)
points = solver.infer_step({'infer': ['x', 'y']})
xs = points['infer']['x'].detach().cpu().numpy().ravel()
y_pred = points['infer']['y'].detach().cpu().numpy().ravel()
plt.plot(xs, y_pred, label='Pred')
points = solver.infer_step({"infer": ["x", "y"]})
xs = points["infer"]["x"].detach().cpu().numpy().ravel()
y_pred = points["infer"]["y"].detach().cpu().numpy().ravel()
plt.plot(xs, y_pred, label="Pred")
y_exact = exact(xs)
plt.plot(xs, y_exact, label='Exact', linestyle='--')
plt.plot(xs, y_exact, label="Exact", linestyle="--")
plt.legend()
plt.xlabel('x')
plt.ylabel('w')
plt.savefig('Euler_beam.png', dpi=300, bbox_inches='tight')
plt.xlabel("x")
plt.ylabel("w")
plt.savefig("Euler_beam.png", dpi=300, bbox_inches="tight")
plt.show()

111
examples/inverse_wave_equation/inverse_wave_equation.py
View File

@ -10,104 +10,121 @@ import matplotlib.pyplot as plt
L = float(pi)
geo = sc.Line1D(0, L)
t_symbol = Symbol('t')
x = Symbol('x')
t_symbol = Symbol("t")
x = Symbol("x")
time_range = {t_symbol: (0, 2 * L)}
c = 1.54
external_filename = 'external_sample.csv'
external_filename = "external_sample.csv"
def generate_observed_data():
if os.path.exists(external_filename):
return
points = geo.sample_interior(density=20,
bounds={x: (0, L)},
param_ranges=time_range,
low_discrepancy=True)
points['u'] = np.sin(points['x']) * (np.sin(c * points['t']) + np.cos(c * points['t']))
points['u'][np.random.choice(len(points['u']), 10, replace=False)] = 3.
points = geo.sample_interior(
density=20, bounds={x: (0, L)}, param_ranges=time_range, low_discrepancy=True
)
points["u"] = np.sin(points["x"]) * (
np.sin(c * points["t"]) + np.cos(c * points["t"])
)
points["u"][np.random.choice(len(points["u"]), 10, replace=False)] = 3.0
points = {k: v.ravel() for k, v in points.items()}
points = pd.DataFrame.from_dict(points)
points.to_csv('external_sample.csv', index=False)
points.to_csv("external_sample.csv", index=False)
generate_observed_data()
# @sc.datanode(name='wave_domain')
@sc.datanode(name='wave_domain', loss_fn='L1')
@sc.datanode(name="wave_domain", loss_fn="L1")
class WaveExternal(sc.SampleDomain):
def __init__(self):
points = pd.read_csv('external_sample.csv')
self.points = {col: points[col].to_numpy().reshape(-1, 1) for col in points.columns}
self.constraints = {'u': self.points.pop('u')}
points = pd.read_csv("external_sample.csv")
self.points = {
col: points[col].to_numpy().reshape(-1, 1) for col in points.columns
}
self.constraints = {"u": self.points.pop("u")}
def sampling(self, *args, **kwargs):
return self.points, self.constraints
@sc.datanode(name='wave_external')
@sc.datanode(name="wave_external")
class WaveEq(sc.SampleDomain):
def sampling(self, *args, **kwargs):
points = geo.sample_interior(density=1000, bounds={x: (0, L)}, param_ranges=time_range)
constraints = {'wave_equation': 0.}
points = geo.sample_interior(
density=1000, bounds={x: (0, L)}, param_ranges=time_range
)
constraints = {"wave_equation": 0.0}
return points, constraints
@sc.datanode(name='center_infer')
@sc.datanode(name="center_infer")
class CenterInfer(sc.SampleDomain):
def __init__(self):
self.points = sc.Variables()
self.points['t'] = np.linspace(0, 2 * L, 200).reshape(-1, 1)
self.points['x'] = np.ones_like(self.points['t']) * L / 2
self.points['area'] = np.ones_like(self.points['t'])
self.points["t"] = np.linspace(0, 2 * L, 200).reshape(-1, 1)
self.points["x"] = np.ones_like(self.points["t"]) * L / 2
self.points["area"] = np.ones_like(self.points["t"])
def sampling(self, *args, **kwargs):
return self.points, {}
net = sc.get_net_node(inputs=('x', 't',), outputs=('u',), name='net1', arch=sc.Arch.mlp)
var_c = sc.get_net_node(inputs=('x',), outputs=('c',), arch=sc.Arch.single_var)
pde = sc.WaveNode(c='c', dim=1, time=True, u='u')
s = sc.Solver(sample_domains=(WaveExternal(), WaveEq()),
netnodes=[net, var_c],
pdes=[pde],
# network_dir='square_network_dir',
network_dir='network_dir',
max_iter=5000)
net = sc.get_net_node(
inputs=(
"x",
"t",
),
outputs=("u",),
name="net1",
arch=sc.Arch.mlp,
)
var_c = sc.get_net_node(inputs=("x",), outputs=("c",), arch=sc.Arch.single_var)
pde = sc.WaveNode(c="c", dim=1, time=True, u="u")
s = sc.Solver(
sample_domains=(WaveExternal(), WaveEq()),
netnodes=[net, var_c],
pdes=[pde],
# network_dir='square_network_dir',
network_dir="network_dir",
max_iter=5000,
)
s.solve()
_, ax = plt.subplots(1, 1, figsize=(8, 4))
coord = s.infer_step(domain_attr={'wave_domain': ['x', 't', 'u']})
num_t = coord['wave_domain']['t'].cpu().detach().numpy().ravel()
num_u = coord['wave_domain']['u'].cpu().detach().numpy().ravel()
ax.scatter(num_t, num_u, c='r', marker='o', label='predicted points')
coord = s.infer_step(domain_attr={"wave_domain": ["x", "t", "u"]})
num_t = coord["wave_domain"]["t"].cpu().detach().numpy().ravel()
num_u = coord["wave_domain"]["u"].cpu().detach().numpy().ravel()
ax.scatter(num_t, num_u, c="r", marker="o", label="predicted points")
print("true paratmeter c: {:.4f}".format(c))
predict_c = var_c.evaluate(torch.Tensor([[1.0]])).item()
print("predicted parameter c: {:.4f}".format(predict_c))
num_t = WaveExternal().sample_fn.points['t'].ravel()
num_u = WaveExternal().sample_fn.constraints['u'].ravel()
ax.scatter(num_t, num_u, c='b', marker='x', label='observed points')
num_t = WaveExternal().sample_fn.points["t"].ravel()
num_u = WaveExternal().sample_fn.constraints["u"].ravel()
ax.scatter(num_t, num_u, c="b", marker="x", label="observed points")
s.sample_domains = (CenterInfer(),)
points = s.infer_step({'center_infer': ['t', 'x', 'u']})
num_t = points['center_infer']['t'].cpu().detach().numpy().ravel()
num_u = points['center_infer']['u'].cpu().detach().numpy().ravel()
num_x = points['center_infer']['x'].cpu().detach().numpy().ravel()
ax.plot(num_t, np.sin(num_x) * (np.sin(c * num_t) + np.cos(c * num_t)), c='k', label='exact')
ax.plot(num_t, num_u, '--', c='g', linewidth=4, label='predict')
points = s.infer_step({"center_infer": ["t", "x", "u"]})
num_t = points["center_infer"]["t"].cpu().detach().numpy().ravel()
num_u = points["center_infer"]["u"].cpu().detach().numpy().ravel()
num_x = points["center_infer"]["x"].cpu().detach().numpy().ravel()
ax.plot(
num_t, np.sin(num_x) * (np.sin(c * num_t) + np.cos(c * num_t)), c="k", label="exact"
)
ax.plot(num_t, num_u, "--", c="g", linewidth=4, label="predict")
ax.legend()
ax.set_xlabel('t')
ax.set_ylabel('u')
ax.set_xlabel("t")
ax.set_ylabel("u")
# ax.set_title(f'Square loss ($x=0.5L$, c={predict_c:.4f}))')
ax.set_title(f'L1 loss ($x=0.5L$, c={predict_c:.4f})')
ax.set_title(f"L1 loss ($x=0.5L$, c={predict_c:.4f})")
ax.grid(True)
ax.set_xlim([-0.5, 6.5])
ax.set_ylim([-3.5, 4.5])
# plt.savefig('square.png', dpi=1000, bbox_inches='tight', pad_inches=0.02)
plt.savefig('L1.png', dpi=1000, bbox_inches='tight', pad_inches=0.02)
plt.savefig("L1.png", dpi=1000, bbox_inches="tight", pad_inches=0.02)
plt.show()
plt.close()

97
examples/minimal_surface_of_revolution/minimal_surface_of_revolution.py
View File

@ -9,26 +9,30 @@ import math
import idrlnet.shortcut as sc
x = sp.Symbol('x')
u = sp.Function('u')(x)
x = sp.Symbol("x")
u = sp.Function("u")(x)
geo = sc.Line1D(-1, 0.5)
@sc.datanode(sigma=1000.)
@sc.datanode(sigma=1000.0)
class Boundary(sc.SampleDomain):
def __init__(self):
self.points = geo.sample_boundary(1, )
self.constraints = {'u': np.cosh(self.points['x'])}
self.points = geo.sample_boundary(
1,
)
self.constraints = {"u": np.cosh(self.points["x"])}
def sampling(self, *args, **kwargs):
return self.points, self.constraints
@sc.datanode(loss_fn='L1')
@sc.datanode(loss_fn="L1")
class Interior(sc.SampleDomain):
def sampling(self, *args, **kwargs):
points = geo.sample_interior(10000)
constraints = {'integral_dx': 0, }
constraints = {
"integral_dx": 0,
}
return points, constraints
@ -36,8 +40,8 @@ class Interior(sc.SampleDomain):
class InteriorInfer(sc.SampleDomain):
def __init__(self):
self.points = sc.Variables()
self.points['x'] = np.linspace(-1, 0.5, 1001, endpoint=True).reshape(-1, 1)
self.points['area'] = np.ones_like(self.points['x'])
self.points["x"] = np.linspace(-1, 0.5, 1001, endpoint=True).reshape(-1, 1)
self.points["area"] = np.ones_like(self.points["x"])
def sampling(self, *args, **kwargs):
return self.points, {}
@ -46,8 +50,8 @@ class InteriorInfer(sc.SampleDomain):
# plot Intermediate results
class PlotReceiver(sc.Receiver):
def __init__(self):
if not os.path.exists('plot'):
os.mkdir('plot')
if not os.path.exists("plot"):
os.mkdir("plot")
xx = np.linspace(-1, 0.5, 1001, endpoint=True)
self.xx = xx
angle = np.linspace(0, math.pi * 2, 100)
@ -58,28 +62,30 @@ class PlotReceiver(sc.Receiver):
zz_mesh = yy * np.sin(angle_mesh)
fig = plt.figure(figsize=(8, 8))
ax = fig.gca(projection='3d')
ax = fig.gca(projection="3d")
ax.set_zlim3d(-1.25 - 1, 0.75 + 1)
ax.set_ylim3d(-2, 2)
ax.set_xlim3d(-2, 2)
my_col = cm.cool((yy * np.ones_like(angle_mesh) - 1.0) / 0.6)
ax.plot_surface(yy_mesh, zz_mesh, xx_mesh, facecolors=my_col)
ax.view_init(elev=15., azim=0)
ax.view_init(elev=15.0, azim=0)
ax.dist = 5
plt.axis('off')
plt.tight_layout(pad=0., w_pad=0., h_pad=.0)
plt.savefig(f'plot/p_exact.png')
plt.axis("off")
plt.tight_layout(pad=0.0, w_pad=0.0, h_pad=0.0)
plt.savefig(f"plot/p_exact.png")
plt.show()
plt.close()
self.predict_history = []
def receive_notify(self, obj: sc.Solver, message: Dict):
if sc.Signal.SOLVE_START in message or (sc.Signal.TRAIN_PIPE_END in message and obj.global_step % 200 == 0):
if sc.Signal.SOLVE_START in message or (
sc.Signal.TRAIN_PIPE_END in message and obj.global_step % 200 == 0
):
print("plotting")
points = s.infer_step({'InteriorInfer': ['x', 'u']})
num_x = points['InteriorInfer']['x'].detach().cpu().numpy().ravel()
num_u = points['InteriorInfer']['u'].detach().cpu().numpy().ravel()
points = s.infer_step({"InteriorInfer": ["x", "u"]})
num_x = points["InteriorInfer"]["x"].detach().cpu().numpy().ravel()
num_u = points["InteriorInfer"]["u"].detach().cpu().numpy().ravel()
angle = np.linspace(0, math.pi * 2, 100)
xx_mesh, angle_mesh = np.meshgrid(num_x, angle)
@ -87,28 +93,28 @@ class PlotReceiver(sc.Receiver):
zz_mesh = num_u * np.sin(angle_mesh)
fig = plt.figure(figsize=(8, 8))
ax = fig.gca(projection='3d')
ax = fig.gca(projection="3d")
ax.set_zlim3d(-1.25 - 1, 0.75 + 1)
ax.set_ylim3d(-2, 2)
ax.set_xlim3d(-2, 2)
my_col = cm.cool((num_u * np.ones_like(angle_mesh) - 1.0) / 0.6)
ax.plot_surface(yy_mesh, zz_mesh, xx_mesh, facecolors=my_col)
ax.view_init(elev=15., azim=0)
ax.view_init(elev=15.0, azim=0)
ax.dist = 5
plt.axis('off')
plt.tight_layout(pad=0., w_pad=0., h_pad=.0)
plt.savefig(f'plot/p_{obj.global_step}.png')
plt.axis("off")
plt.tight_layout(pad=0.0, w_pad=0.0, h_pad=0.0)
plt.savefig(f"plot/p_{obj.global_step}.png")
plt.show()
plt.close()
self.predict_history.append((num_u, obj.global_step))
if sc.Signal.SOLVE_END in message:
try:
with open('result.pickle', 'rb') as f:
with open("result.pickle", "rb") as f:
self.predict_history = pickle.load(f)
except:
with open('result.pickle', 'wb') as f:
with open("result.pickle", "wb") as f:
pickle.dump(self.predict_history, f)
for yy, step in self.predict_history:
if step == 0:
@ -116,28 +122,35 @@ class PlotReceiver(sc.Receiver):
if step == 200:
plt.plot(yy, self.xx, label=f"iter={step}")
if step == 800:
plt.plot(yy[::100], self.xx[::100], '-o', label=f"iter={step}")
plt.plot(np.cosh(self.xx)[::100], self.xx[::100], '-x', label='exact')
plt.plot([0, np.cosh(-1)], [-1, -1], '--', color='gray')
plt.plot([0, np.cosh(0.5)], [0.5, 0.5], '--', color='gray')
plt.plot(yy[::100], self.xx[::100], "-o", label=f"iter={step}")
plt.plot(np.cosh(self.xx)[::100], self.xx[::100], "-x", label="exact")
plt.plot([0, np.cosh(-1)], [-1, -1], "--", color="gray")
plt.plot([0, np.cosh(0.5)], [0.5, 0.5], "--", color="gray")
plt.legend()
plt.xlim([0, 1.7])
plt.xlabel('y')
plt.ylabel('x')
plt.savefig('iterations.png')
plt.xlabel("y")
plt.ylabel("x")
plt.savefig("iterations.png")
plt.show()
plt.close()
dx_exp = sc.ExpressionNode(expression=sp.Abs(u) * sp.sqrt((u.diff(x)) ** 2 + 1), name='dx')
net = sc.get_net_node(inputs=('x',), outputs=('u',), name='net', arch=sc.Arch.mlp)
dx_exp = sc.ExpressionNode(
expression=sp.Abs(u) * sp.sqrt((u.diff(x)) ** 2 + 1), name="dx"
)
net = sc.get_net_node(inputs=("x",), outputs=("u",), name="net", arch=sc.Arch.mlp)
integral = sc.ICNode('dx', dim=1, time=False)
integral = sc.ICNode("dx", dim=1, time=False)
s = sc.Solver(sample_domains=(Boundary(), Interior(), InteriorInfer()),
netnodes=[net],
init_network_dirs=['pretrain_network_dir'],
pdes=[dx_exp, integral, ],
max_iter=1500)
s = sc.Solver(
sample_domains=(Boundary(), Interior(), InteriorInfer()),
netnodes=[net],
init_network_dirs=["pretrain_network_dir"],
pdes=[
dx_exp,
integral,
],
max_iter=1500,
)
s.register_receiver(PlotReceiver())
s.solve()

28
examples/minimal_surface_of_revolution/minimal_surface_of_revolution_pretrain.py
View File

@ -3,30 +3,34 @@ import numpy as np
import sympy as sp
import idrlnet.shortcut as sc
x = sp.Symbol('x')
x = sp.Symbol("x")
geo = sc.Line1D(-1, 0.5)
@sc.datanode(loss_fn='L1')
@sc.datanode(loss_fn="L1")
class Interior(sc.SampleDomain):
def sampling(self, *args, **kwargs):
points = geo.sample_interior(100)
constraints = {'u': (np.cosh(0.5) - np.cosh(-1)) / 1.5 * (x + 1.0) + np.cosh(-1)}
constraints = {
"u": (np.cosh(0.5) - np.cosh(-1)) / 1.5 * (x + 1.0) + np.cosh(-1)
}
return points, constraints
net = sc.get_net_node(inputs=('x',), outputs=('u',), name='net', arch=sc.Arch.mlp)
net = sc.get_net_node(inputs=("x",), outputs=("u",), name="net", arch=sc.Arch.mlp)
s = sc.Solver(sample_domains=(Interior(),),
netnodes=[net],
pdes=[],
network_dir='pretrain_network_dir',
max_iter=1000)
s = sc.Solver(
sample_domains=(Interior(),),
netnodes=[net],
pdes=[],
network_dir="pretrain_network_dir",
max_iter=1000,
)
s.solve()
points = s.infer_step({'Interior': ['x', 'u']})
num_x = points['Interior']['x'].detach().cpu().numpy().ravel()
num_u = points['Interior']['u'].detach().cpu().numpy().ravel()
points = s.infer_step({"Interior": ["x", "u"]})
num_x = points["Interior"]["x"].detach().cpu().numpy().ravel()
num_u = points["Interior"]["u"].detach().cpu().numpy().ravel()
xx = np.linspace(-1, 0.5, 1000, endpoint=True)
yy = np.cosh(xx)

80
examples/parameterized_poisson/parameterized_poisson.py
View File

@ -4,18 +4,20 @@ import matplotlib.pyplot as plt
import matplotlib.tri as tri
import numpy as np
x, y = sp.symbols('x y')
temp = sp.Symbol('temp')
x, y = sp.symbols("x y")
temp = sp.Symbol("temp")
temp_range = {temp: (-0.2, 0.2)}
rec = sc.Rectangle((-1., -1.), (1., 1.))
rec = sc.Rectangle((-1.0, -1.0), (1.0, 1.0))
@sc.datanode
class Right(sc.SampleDomain):
# Due to `name` is not specified, Right will be the name of datanode automatically
def sampling(self, *args, **kwargs):
points = rec.sample_boundary(1000, sieve=(sp.Eq(x, 1.)), param_ranges=temp_range)
constraints = sc.Variables({'T': 0.})
points = rec.sample_boundary(
1000, sieve=(sp.Eq(x, 1.0)), param_ranges=temp_range
)
constraints = sc.Variables({"T": 0.0})
return points, constraints
@ -23,16 +25,20 @@ class Right(sc.SampleDomain):
class Left(sc.SampleDomain):
# Due to `name` is not specified, Left will be the name of datanode automatically
def sampling(self, *args, **kwargs):
points = rec.sample_boundary(1000, sieve=(sp.Eq(x, -1.)), param_ranges=temp_range)
constraints = sc.Variables({'T': temp})
points = rec.sample_boundary(
1000, sieve=(sp.Eq(x, -1.0)), param_ranges=temp_range
)
constraints = sc.Variables({"T": temp})
return points, constraints
@sc.datanode(name="up_down")
class UpDownBoundaryDomain(sc.SampleDomain):
def sampling(self, *args, **kwargs):
points = rec.sample_boundary(1000, sieve=((x > -1.) & (x < 1.)), param_ranges=temp_range)
constraints = sc.Variables({'normal_gradient_T': 0.})
points = rec.sample_boundary(
1000, sieve=((x > -1.0) & (x < 1.0)), param_ranges=temp_range
)
constraints = sc.Variables({"normal_gradient_T": 0.0})
return points, constraints
@ -43,47 +49,53 @@ class HeatDomain(sc.SampleDomain):
def sampling(self, *args, **kwargs):
points = rec.sample_interior(self.points, param_ranges=temp_range)
constraints = sc.Variables({'diffusion_T': 1.})
constraints = sc.Variables({"diffusion_T": 1.0})
return points, constraints
net = sc.get_net_node(inputs=('x', 'y', 'temp'), outputs=('T',), name='net1', arch=sc.Arch.mlp)
pde = sc.DiffusionNode(T='T', D=1., Q=0., dim=2, time=False)
grad = sc.NormalGradient('T', dim=2, time=False)
s = sc.Solver(sample_domains=(HeatDomain(), Left(), Right(), UpDownBoundaryDomain()),
netnodes=[net],
pdes=[pde, grad],
max_iter=3000)
net = sc.get_net_node(
inputs=("x", "y", "temp"), outputs=("T",), name="net1", arch=sc.Arch.mlp
)
pde = sc.DiffusionNode(T="T", D=1.0, Q=0.0, dim=2, time=False)
grad = sc.NormalGradient("T", dim=2, time=False)
s = sc.Solver(
sample_domains=(HeatDomain(), Left(), Right(), UpDownBoundaryDomain()),
netnodes=[net],
pdes=[pde, grad],
max_iter=3000,
)
s.solve()
def infer_temp(temp_num, file_suffix=None):
temp_range[temp] = temp_num
s.set_domain_parameter('heat_domain', {'points': 10000})
coord = s.infer_step({'heat_domain': ['x', 'y', 'T']})
num_x = coord['heat_domain']['x'].cpu().detach().numpy().ravel()
num_y = coord['heat_domain']['y'].cpu().detach().numpy().ravel()
num_Tp = coord['heat_domain']['T'].cpu().detach().numpy().ravel()
s.set_domain_parameter("heat_domain", {"points": 10000})
coord = s.infer_step({"heat_domain": ["x", "y", "T"]})
num_x = coord["heat_domain"]["x"].cpu().detach().numpy().ravel()
num_y = coord["heat_domain"]["y"].cpu().detach().numpy().ravel()
num_Tp = coord["heat_domain"]["T"].cpu().detach().numpy().ravel()
# Ground truth
num_T = -(num_x + 1 + temp_num) * (num_x - 1.) / 2
num_T = -(num_x + 1 + temp_num) * (num_x - 1.0) / 2
fig, ax = plt.subplots(1, 3, figsize=(10, 3))
triang_total = tri.Triangulation(num_x, num_y)
ax[0].tricontourf(triang_total, num_Tp, 100, cmap='hot', vmin=-0.2, vmax=1.21 / 2)
ax[0].axis('off')
ax[0].set_title(f'prediction($T_l={temp_num:.2f}$)')
ax[1].tricontourf(triang_total, num_T, 100, cmap='hot', vmin=-0.2, vmax=1.21 / 2)
ax[1].axis('off')
ax[1].set_title(f'ground truth($T_l={temp_num:.2f}$)')
ax[2].tricontourf(triang_total, np.abs(num_T - num_Tp), 100, cmap='hot', vmin=0, vmax=1.21 / 2)
ax[2].axis('off')
ax[2].set_title('absolute error')
ax[0].tricontourf(triang_total, num_Tp, 100, cmap="hot", vmin=-0.2, vmax=1.21 / 2)
ax[0].axis("off")
ax[0].set_title(f"prediction($T_l={temp_num:.2f}$)")
ax[1].tricontourf(triang_total, num_T, 100, cmap="hot", vmin=-0.2, vmax=1.21 / 2)
ax[1].axis("off")
ax[1].set_title(f"ground truth($T_l={temp_num:.2f}$)")
ax[2].tricontourf(
triang_total, np.abs(num_T - num_Tp), 100, cmap="hot", vmin=0, vmax=1.21 / 2
)
ax[2].axis("off")
ax[2].set_title("absolute error")
if file_suffix is None:
plt.savefig(f'poisson_{temp_num:.2f}.png', dpi=300, bbox_inches='tight')
plt.savefig(f"poisson_{temp_num:.2f}.png", dpi=300, bbox_inches="tight")
plt.show()
else:
plt.savefig(f'poisson_{file_suffix}.png', dpi=300, bbox_inches='tight')
plt.savefig(f"poisson_{file_suffix}.png", dpi=300, bbox_inches="tight")
plt.show()

70
examples/simple_poisson/simple_poisson.py
View File

@ -4,24 +4,24 @@ import matplotlib.pyplot as plt
import matplotlib.tri as tri
import numpy as np
x, y = sp.symbols('x y')
rec = sc.Rectangle((-1., -1.), (1., 1.))
x, y = sp.symbols("x y")
rec = sc.Rectangle((-1.0, -1.0), (1.0, 1.0))
@sc.datanode
class LeftRight(sc.SampleDomain):
# Due to `name` is not specified, LeftRight will be the name of datanode automatically
def sampling(self, *args, **kwargs):
points = rec.sample_boundary(1000, sieve=((y > -1.) & (y < 1.)))
constraints = {'T': 0.}
points = rec.sample_boundary(1000, sieve=((y > -1.0) & (y < 1.0)))
constraints = {"T": 0.0}
return points, constraints
@sc.datanode(name="up_down")
class UpDownBoundaryDomain(sc.SampleDomain):
def sampling(self, *args, **kwargs):
points = rec.sample_boundary(1000, sieve=((x > -1.) & (x < 1.)))
constraints = {'normal_gradient_T': 0.}
points = rec.sample_boundary(1000, sieve=((x > -1.0) & (x < 1.0)))
constraints = {"normal_gradient_T": 0.0}
return points, constraints
@ -32,39 +32,51 @@ class HeatDomain(sc.SampleDomain):
def sampling(self, *args, **kwargs):
points = rec.sample_interior(self.points)
constraints = {'diffusion_T': 1.}
constraints = {"diffusion_T": 1.0}
return points, constraints
net = sc.get_net_node(inputs=('x', 'y',), outputs=('T',), name='net1', arch=sc.Arch.mlp)
pde = sc.DiffusionNode(T='T', D=1., Q=0., dim=2, time=False)
grad = sc.NormalGradient('T', dim=2, time=False)
s = sc.Solver(sample_domains=(HeatDomain(), LeftRight(), UpDownBoundaryDomain()),
netnodes=[net],
pdes=[pde, grad],
max_iter=1000)
net = sc.get_net_node(
inputs=(
"x",
"y",
),
outputs=("T",),
name="net1",
arch=sc.Arch.mlp,
)
pde = sc.DiffusionNode(T="T", D=1.0, Q=0.0, dim=2, time=False)
grad = sc.NormalGradient("T", dim=2, time=False)
s = sc.Solver(
sample_domains=(HeatDomain(), LeftRight(), UpDownBoundaryDomain()),
netnodes=[net],
pdes=[pde, grad],
max_iter=1000,
)
s.solve()
# Inference
s.set_domain_parameter('heat_domain', {'points': 10000})
coord = s.infer_step({'heat_domain': ['x', 'y', 'T']})
num_x = coord['heat_domain']['x'].cpu().detach().numpy().ravel()
num_y = coord['heat_domain']['y'].cpu().detach().numpy().ravel()
num_Tp = coord['heat_domain']['T'].cpu().detach().numpy().ravel()
s.set_domain_parameter("heat_domain", {"points": 10000})
coord = s.infer_step({"heat_domain": ["x", "y", "T"]})
num_x = coord["heat_domain"]["x"].cpu().detach().numpy().ravel()
num_y = coord["heat_domain"]["y"].cpu().detach().numpy().ravel()
num_Tp = coord["heat_domain"]["T"].cpu().detach().numpy().ravel()
# Ground truth
num_T = -num_x * num_x / 2 + 0.5
fig, ax = plt.subplots(1, 3, figsize=(10, 3))
triang_total = tri.Triangulation(num_x, num_y)
ax[0].tricontourf(triang_total, num_Tp, 100, cmap='hot', vmin=0, vmax=0.5)
ax[0].axis('off')
ax[0].set_title('prediction')
ax[1].tricontourf(triang_total, num_T, 100, cmap='hot', vmin=0, vmax=0.5)
ax[1].axis('off')
ax[1].set_title('ground truth')
ax[2].tricontourf(triang_total, np.abs(num_T - num_Tp), 100, cmap='hot', vmin=0, vmax=0.5)
ax[2].axis('off')
ax[2].set_title('absolute error')
ax[0].tricontourf(triang_total, num_Tp, 100, cmap="hot", vmin=0, vmax=0.5)
ax[0].axis("off")
ax[0].set_title("prediction")
ax[1].tricontourf(triang_total, num_T, 100, cmap="hot", vmin=0, vmax=0.5)
ax[1].axis("off")
ax[1].set_title("ground truth")
ax[2].tricontourf(
triang_total, np.abs(num_T - num_Tp), 100, cmap="hot", vmin=0, vmax=0.5
)
ax[2].axis("off")
ax[2].set_title("absolute error")
plt.savefig('simple_poisson.png', dpi=300, bbox_inches='tight')
plt.savefig("simple_poisson.png", dpi=300, bbox_inches="tight")

11
idrlnet/__init__.py
View File

@ -1,15 +1,16 @@
import torch
# todo more careful check
GPU_ENABLED = True
if torch.cuda.is_available():
try:
_ = torch.Tensor([0., 0.]).cuda()
torch.set_default_tensor_type('torch.cuda.FloatTensor')
print('gpu available')
_ = torch.Tensor([0.0, 0.0]).cuda()
torch.set_default_tensor_type("torch.cuda.FloatTensor")
print("gpu available")
GPU_ENABLED = True
except:
print('gpu not available')
print("gpu not available")
GPU_ENABLED = False
else:
print('gpu not available')
print("gpu not available")
GPU_ENABLED = False

198
idrlnet/architecture/grid.py
View File

@ -15,14 +15,28 @@ def indicator(xn: torch.Tensor, *axis_bounds):
i = 0
lb, ub, lb_eq = axis_bounds[0]
if lb_eq:
indic = torch.logical_and(xn[:, i:i + 1] >= axis_bounds[0][0], axis_bounds[0][1] >= xn[:, i:i + 1])
indic = torch.logical_and(
xn[:, i : i + 1] >= axis_bounds[0][0], axis_bounds[0][1] >= xn[:, i : i + 1]
)
else:
indic = torch.logical_and(xn[:, i:i + 1] > axis_bounds[0][0], axis_bounds[0][1] >= xn[:, i:i + 1])
indic = torch.logical_and(
xn[:, i : i + 1] > axis_bounds[0][0], axis_bounds[0][1] >= xn[:, i : i + 1]
)
for i, (lb, ub, lb_eq) in enumerate(axis_bounds[1:]):
if lb_eq:
indic = torch.logical_and(indic, torch.logical_and(xn[:, i + 1:i + 2] >= lb, ub >= xn[:, i + 1:i + 2]))
indic = torch.logical_and(
indic,
torch.logical_and(
xn[:, i + 1 : i + 2] >= lb, ub >= xn[:, i + 1 : i + 2]
),
)
else:
indic = torch.logical_and(indic, torch.logical_and(xn[:, i + 1:i + 2] > lb, ub >= xn[:, i + 1:i + 2]))
indic = torch.logical_and(
indic,
torch.logical_and(
xn[:, i + 1 : i + 2] > lb, ub >= xn[:, i + 1 : i + 2]
),
)
return indic
@ -34,8 +48,8 @@ class NetEval(torch.nn.Module):
self.n_columns = len(self.columns) - 1
self.n_rows = len(self.rows) - 1
self.nets = []
if 'net_generator' in kwargs.keys():
net_gen = kwargs.pop('net_generator')
if "net_generator" in kwargs.keys():
net_gen = kwargs.pop("net_generator")
else:
net_gen = lambda: mlp.MLP([n_inputs, 20, 20, 20, 20, n_outputs])
for i in range(self.n_columns):
@ -50,8 +64,18 @@ class NetEval(torch.nn.Module):
y = 0
for i in range(self.n_columns):
for j in range(self.n_rows):
y += indicator(xn, (self.columns[i], self.columns[i + 1], True if i == 0 else False),
(self.rows[j], self.rows[j + 1], True if j == 0 else False)) * self.nets[i][j](x)
y += (
indicator(
xn,
(
self.columns[i],
self.columns[i + 1],
True if i == 0 else False,
),
(self.rows[j], self.rows[j + 1], True if j == 0 else False),
)
* self.nets[i][j](x)
)
return y
@ -59,7 +83,10 @@ class Interface:
def __init__(self, points1, points2, nr, outputs, i1, j1, i2, j2, overlap=0.2):
x_min, x_max = min(points1[0], points2[0]), max(points1[0], points2[0])
y_min, y_max = min(points1[1], points2[1]), max(points1[1], points2[1])
self.geo = Rectangle((x_min - overlap / 2, y_min - overlap / 2), (x_max + overlap / 2, y_max + overlap / 2))
self.geo = Rectangle(
(x_min - overlap / 2, y_min - overlap / 2),
(x_max + overlap / 2, y_max + overlap / 2),
)
self.nr = nr
self.outputs = outputs
self.i1 = i1
@ -69,16 +96,26 @@ class Interface:
def __call__(self, *args, **kwargs):
points = self.geo.sample_boundary(self.nr)
return points, {f'difference_{output}_{self.i1}_{self.j1}_{output}_{self.i2}_{self.j2}': 0
for output in self.outputs}
return points, {
f"difference_{output}_{self.i1}_{self.j1}_{output}_{self.i2}_{self.j2}": 0
for output in self.outputs
}
class NetGridNode(NetNode):
def __init__(self, inputs: Union[Tuple, List[str]], outputs: Union[Tuple, List[str]],
x_segments: List[float] = None, y_segments: List[float] = None,
z_segments: List[float] = None, t_segments: List[float] = None, columns: List[float] = None,
rows: List[float] = None, *args,
**kwargs):
def __init__(
self,
inputs: Union[Tuple, List[str]],
outputs: Union[Tuple, List[str]],
x_segments: List[float] = None,
y_segments: List[float] = None,
z_segments: List[float] = None,
t_segments: List[float] = None,
columns: List[float] = None,
rows: List[float] = None,
*args,
**kwargs,
):
if columns is None:
columns = []
if rows is None:
@ -87,8 +124,16 @@ class NetGridNode(NetNode):
fixed = False
self.columns = columns
self.rows = rows
self.main_net = NetEval(n_inputs=len(inputs), n_outputs=len(outputs), columns=columns, rows=rows, **kwargs)
super(NetGridNode, self).__init__(inputs, outputs, self.main_net, fixed, require_no_grad, *args, **kwargs)
self.main_net = NetEval(
n_inputs=len(inputs),
n_outputs=len(outputs),
columns=columns,
rows=rows,
**kwargs,
)
super(NetGridNode, self).__init__(
inputs, outputs, self.main_net, fixed, require_no_grad, *args, **kwargs
)
def get_grid(self, overlap, nr_points_per_interface_area=100):
n_columns = self.main_net.n_columns
@ -98,54 +143,119 @@ class NetGridNode(NetNode):
constraints = []
for i in range(n_columns):
for j in range(n_rows):
nn = NetNode(inputs=self.inputs,
outputs=tuple(f'{output}_{i}_{j}' for output in self.outputs),
net=self.main_net.nets[i][j],
name=f'{self.name}[{i}][{j}]')
nn = NetNode(
inputs=self.inputs,
outputs=tuple(f"{output}_{i}_{j}" for output in self.outputs),
net=self.main_net.nets[i][j],
name=f"{self.name}[{i}][{j}]",
)
nn.is_reference = True
netnodes.append(nn)
if i > 0:
for output in self.outputs:
diff_Node = Difference(f'{output}_{i - 1}_{j}', f'{output}_{i}_{j}', dim=2, time=False)
diff_Node = Difference(
f"{output}_{i - 1}_{j}",
f"{output}_{i}_{j}",
dim=2,
time=False,
)
eqs.append(diff_Node)
interface = Interface((self.columns[i], self.rows[j]), (self.columns[i], self.rows[j + 1]),
nr_points_per_interface_area, self.outputs, i - 1, j, i, j, overlap=overlap)
interface = Interface(
(self.columns[i], self.rows[j]),
(self.columns[i], self.rows[j + 1]),
nr_points_per_interface_area,
self.outputs,
i - 1,
j,
i,
j,
overlap=overlap,
)
constraints.append(get_data_node(interface, name=f'interface[{i - 1}][{j}]_[{i}][{j}]'))
constraints.append(
get_data_node(
interface, name=f"interface[{i - 1}][{j}]_[{i}][{j}]"
)
)
if j > 0:
for output in self.outputs:
diff_Node = Difference(f'{output}_{i}_{j - 1}', f'{output}_{i}_{j}', dim=2, time=False)
diff_Node = Difference(
f"{output}_{i}_{j - 1}",
f"{output}_{i}_{j}",
dim=2,
time=False,
)
eqs.append(diff_Node)
interface = Interface((self.columns[i], self.rows[j]), (self.columns[i + 1], self.rows[j]),
nr_points_per_interface_area, self.outputs, i, j - 1, i, j, overlap=overlap)
interface = Interface(
(self.columns[i], self.rows[j]),
(self.columns[i + 1], self.rows[j]),
nr_points_per_interface_area,
self.outputs,
i,
j - 1,
i,
j,
overlap=overlap,
)
constraints.append(get_data_node(interface, name=f'interface[{i}][{j - 1}]_[{i}][{j}]'))
constraints.append(
get_data_node(
interface, name=f"interface[{i}][{j - 1}]_[{i}][{j}]"
)
)
return netnodes, eqs, constraints
def get_net_reg_grid_2d(inputs: Union[Tuple, List[str]], outputs: Union[Tuple, List[str]], name: str,
columns: List[float], rows: List[float], **kwargs):
if 'overlap' in kwargs.keys():
overlap = kwargs.pop('overlap')
def get_net_reg_grid_2d(
inputs: Union[Tuple, List[str]],
outputs: Union[Tuple, List[str]],
name: str,
columns: List[float],
rows: List[float],
**kwargs,
):
if "overlap" in kwargs.keys():
overlap = kwargs.pop("overlap")
else:
overlap = 0.2
net = NetGridNode(inputs=inputs, outputs=outputs, columns=columns, rows=rows, name=name, **kwargs)
nets, eqs, interfaces = net.get_grid(nr_points_per_interface_area=1000, overlap=overlap)
net = NetGridNode(
inputs=inputs, outputs=outputs, columns=columns, rows=rows, name=name, **kwargs
)
nets, eqs, interfaces = net.get_grid(
nr_points_per_interface_area=1000, overlap=overlap
)
nets.append(net)
return nets, eqs, interfaces
def get_net_reg_grid(inputs: Union[Tuple, List[str]], outputs: Union[Tuple, List[str]], name: str,
x_segments: List[float] = None, y_segments: List[float] = None, z_segments: List[float] = None,
t_segments: List[float] = None, **kwargs):
if 'overlap' in kwargs.keys():
overlap = kwargs.pop('overlap')
def get_net_reg_grid(
inputs: Union[Tuple, List[str]],
outputs: Union[Tuple, List[str]],
name: str,
x_segments: List[float] = None,
y_segments: List[float] = None,
z_segments: List[float] = None,
t_segments: List[float] = None,
**kwargs,
):
if "overlap" in kwargs.keys():
overlap = kwargs.pop("overlap")
else:
overlap = 0.2
net = NetGridNode(inputs=inputs, outputs=outputs, x_segments=x_segments, y_segments=y_segments,
z_segments=z_segments, t_segments=t_segments, name=name, **kwargs)
nets, eqs, interfaces = net.get_grid(nr_points_per_interface_area=1000, overlap=overlap)
net = NetGridNode(
inputs=inputs,
outputs=outputs,
x_segments=x_segments,
y_segments=y_segments,
z_segments=z_segments,
t_segments=t_segments,
name=name,
**kwargs,
)
nets, eqs, interfaces = net.get_grid(
nr_points_per_interface_area=1000, overlap=overlap
)
nets.append(net)
return nets, eqs, interfaces

67
idrlnet/architecture/layer.py
View File

@ -5,35 +5,40 @@ import math
import torch
from idrlnet.header import logger
__all__ = ['Activation', 'Initializer', 'get_activation_layer', 'get_linear_layer']
__all__ = ["Activation", "Initializer", "get_activation_layer", "get_linear_layer"]
class Activation(enum.Enum):
relu = 'relu'
silu = 'silu'
selu = 'selu'
sigmoid = 'sigmoid'
tanh = 'tanh'
swish = 'swish'
poly = 'poly'
sin = 'sin'
leaky_relu = 'leaky_relu'
relu = "relu"
silu = "silu"
selu = "selu"
sigmoid = "sigmoid"
tanh = "tanh"
swish = "swish"
poly = "poly"
sin = "sin"
leaky_relu = "leaky_relu"
class Initializer(enum.Enum):
Xavier_uniform = 'Xavier_uniform'
constant = 'constant'
kaiming_uniform = 'kaiming_uniform'
default = 'default'
Xavier_uniform = "Xavier_uniform"
constant = "constant"
kaiming_uniform = "kaiming_uniform"
default = "default"
def get_linear_layer(input_dim: int, output_dim: int, weight_norm=False,
initializer: Initializer = Initializer.Xavier_uniform, *args,
**kwargs):
def get_linear_layer(
input_dim: int,
output_dim: int,
weight_norm=False,
initializer: Initializer = Initializer.Xavier_uniform,
*args,
**kwargs,
):
layer = torch.nn.Linear(input_dim, output_dim)
init_method = InitializerFactory.get_initializer(initializer=initializer, **kwargs)
init_method(layer.weight)
torch.nn.init.constant_(layer.bias, 0.)
torch.nn.init.constant_(layer.bias, 0.0)
if weight_norm:
layer = torch.nn.utils.weight_norm(layer)
return layer
@ -81,8 +86,10 @@ class ActivationFactory:
elif activation == Activation.silu:
return Silu()
else:
logger.error(f'Activation {activation} is not supported!')
raise NotImplementedError('Activation ' + activation.name + ' is not supported')
logger.error(f"Activation {activation} is not supported!")
raise NotImplementedError(
"Activation " + activation.name + " is not supported"
)
class Silu:
@ -105,8 +112,12 @@ def leaky_relu(x, leak=0.1):
def triangle_wave(x):
y = 0.0
for i in range(3):
y += (-1.0) ** (i) * torch.sin(2.0 * math.pi * (2.0 * i + 1.0) * x) / (2.0 * i + 1.0) ** (2)
y = 0.5 * (8 / (math.pi ** 2) * y) + .5
y += (
(-1.0) ** (i)
* torch.sin(2.0 * math.pi * (2.0 * i + 1.0) * x)
/ (2.0 * i + 1.0) ** (2)
)
y = 0.5 * (8 / (math.pi ** 2) * y) + 0.5
return y
@ -139,11 +150,15 @@ class InitializerFactory:
if initializer == Initializer.Xavier_uniform:
return torch.nn.init.xavier_uniform_
elif initializer == Initializer.constant:
return lambda x: torch.nn.init.constant_(x, kwargs['constant'])
return lambda x: torch.nn.init.constant_(x, kwargs["constant"])
elif initializer == Initializer.kaiming_uniform:
return lambda x: torch.nn.init.kaiming_uniform_(x, mode='fan_in', nonlinearity='relu')
return lambda x: torch.nn.init.kaiming_uniform_(
x, mode="fan_in", nonlinearity="relu"
)
elif initializer == Initializer.default:
return lambda x: x
else:
logger.error('initialization ' + initializer.name + ' is not supported')
raise NotImplementedError('initialization ' + initializer.name + ' is not supported')
logger.error("initialization " + initializer.name + " is not supported")
raise NotImplementedError(
"initialization " + initializer.name + " is not supported"
)

184
idrlnet/architecture/mlp.py
View File

@ -3,7 +3,12 @@
import torch
import math
from collections import OrderedDict
from idrlnet.architecture.layer import get_linear_layer, get_activation_layer, Initializer, Activation
from idrlnet.architecture.layer import (
get_linear_layer,
get_activation_layer,
Initializer,
Activation,
)
from typing import List, Union, Tuple
from idrlnet.header import logger
from idrlnet.net import NetNode
@ -28,25 +33,36 @@ class MLP(torch.nn.Module):
:param kwargs:
"""
def __init__(self, n_seq: List[int], activation: Union[Activation, List[Activation]] = Activation.swish,
initialization: Initializer = Initializer.kaiming_uniform,
weight_norm: bool = True, name: str = 'mlp', *args, **kwargs):
def __init__(
self,
n_seq: List[int],
activation: Union[Activation, List[Activation]] = Activation.swish,
initialization: Initializer = Initializer.kaiming_uniform,
weight_norm: bool = True,
name: str = "mlp",
*args,
**kwargs,
):
super().__init__()
self.layers = OrderedDict()
current_activation = ''
current_activation = ""
assert isinstance(n_seq, Activation) or isinstance(n_seq, list)
for i in range(len(n_seq) - 1):
if isinstance(activation, list):
current_activation = activation[i]
elif i < len(n_seq) - 2:
current_activation = activation
self.layers['{}_{}'.format(name, i)] = get_linear_layer(n_seq[i], n_seq[i + 1], weight_norm, initialization,
*args, **kwargs)
if (isinstance(activation, Activation) and i < len(n_seq) - 2) or isinstance(activation, list):
if current_activation == 'none':
self.layers["{}_{}".format(name, i)] = get_linear_layer(
n_seq[i], n_seq[i + 1], weight_norm, initialization, *args, **kwargs
)
if (
isinstance(activation, Activation) and i < len(n_seq) - 2
) or isinstance(activation, list):
if current_activation == "none":
continue
self.layers['{}_{}_activation'.format(name, i)] = get_activation_layer(current_activation, *args,
**kwargs)
self.layers["{}_{}_activation".format(name, i)] = get_activation_layer(
current_activation, *args, **kwargs
)
self.layers = torch.nn.ModuleDict(self.layers)
def forward(self, x):
@ -61,8 +77,15 @@ class MLP(torch.nn.Module):
class Siren(torch.nn.Module):
def __init__(self, n_seq: List[int], first_omega: float = 30.0,
omega: float = 30.0, name: str = 'siren', *args, **kwargs):
def __init__(
self,
n_seq: List[int],
first_omega: float = 30.0,
omega: float = 30.0,
name: str = "siren",
*args,
**kwargs,
):
super().__init__()
self.layers = OrderedDict()
self.first_omega = first_omega
@ -70,24 +93,37 @@ class Siren(torch.nn.Module):
assert isinstance(n_seq, str) or isinstance(n_seq, list)
for i in range(len(n_seq) - 1):
if i == 0:
self.layers['{}_{}'.format(name, i)] = self.get_siren_layer(n_seq[i], n_seq[i + 1], True, first_omega)
self.layers["{}_{}".format(name, i)] = self.get_siren_layer(
n_seq[i], n_seq[i + 1], True, first_omega
)
else:
self.layers['{}_{}'.format(name, i)] = self.get_siren_layer(n_seq[i], n_seq[i + 1], False, omega)
self.layers["{}_{}".format(name, i)] = self.get_siren_layer(
n_seq[i], n_seq[i + 1], False, omega
)
if i < (len(n_seq) - 2):
self.layers['{}_{}_activation'.format(name, i)] = get_activation_layer(Activation.sin, *args, **kwargs)
self.layers["{}_{}_activation".format(name, i)] = get_activation_layer(
Activation.sin, *args, **kwargs
)
self.layers = torch.nn.ModuleDict(self.layers)
@staticmethod
def get_siren_layer(input_dim: int, output_dim: int, is_first: bool, omega_0: float):
def get_siren_layer(
input_dim: int, output_dim: int, is_first: bool, omega_0: float
):
layer = torch.nn.Linear(input_dim, output_dim)
dim = input_dim
if is_first:
torch.nn.init.uniform_(layer.weight.data, -1.0 / dim, 1.0 / dim)
else:
torch.nn.init.uniform_(layer.weight.data, -1.0 * math.sqrt(6.0 / dim) / omega_0,
math.sqrt(6.0 / dim) / omega_0)
torch.nn.init.uniform_(layer.bias.data, -1 * math.sqrt(1 / dim), math.sqrt(1 / dim))
torch.nn.init.uniform_(
layer.weight.data,
-1.0 * math.sqrt(6.0 / dim) / omega_0,
math.sqrt(6.0 / dim) / omega_0,
)
torch.nn.init.uniform_(
layer.bias.data, -1 * math.sqrt(1 / dim), math.sqrt(1 / dim)
)
return layer
def forward(self, x):
@ -113,7 +149,7 @@ class SingleVar(torch.nn.Module):
self.value = torch.nn.Parameter(torch.Tensor([initialization]))
def forward(self, x) -> torch.Tensor:
return x[:, :1] * 0. + self.value
return x[:, :1] * 0.0 + self.value
def get_value(self) -> torch.Tensor:
return self.value
@ -135,7 +171,7 @@ class BoundedSingleVar(torch.nn.Module):
self.ub, self.lb = upper_bound, lower_bound
def forward(self, x) -> torch.Tensor:
return x[:, :1] * 0. + self.layer(self.value) * (self.ub - self.lb) + self.lb
return x[:, :1] * 0.0 + self.layer(self.value) * (self.ub - self.lb) + self.lb
def get_value(self) -> torch.Tensor:
return self.layer(self.value) * (self.ub - self.lb) + self.lb
@ -144,18 +180,22 @@ class BoundedSingleVar(torch.nn.Module):
class Arch(enum.Enum):
"""Enumerate pre-defined neural networks."""
mlp = 'mlp'
toy = 'toy'
mlp_xl = 'mlp_xl'
single_var = 'single_var'
bounded_single_var = 'bounded_single_var'
siren = 'siren'
mlp = "mlp"
toy = "toy"
mlp_xl = "mlp_xl"
single_var = "single_var"
bounded_single_var = "bounded_single_var"
siren = "siren"
def get_net_node(inputs: Union[Tuple[str, ...], List[str]], outputs: Union[Tuple[str, ...], List[str]],
arch: Arch = None, name=None,
*args,
**kwargs) -> NetNode:
def get_net_node(
inputs: Union[Tuple[str, ...], List[str]],
outputs: Union[Tuple[str, ...], List[str]],
arch: Arch = None,
name=None,
*args,
**kwargs,
) -> NetNode:
"""Get a net node wrapping networks with pre-defined configurations
:param inputs: Input symbols for the generated node.
@ -175,36 +215,65 @@ def get_net_node(inputs: Union[Tuple[str, ...], List[str]], outputs: Union[Tuple
:return:
"""
arch = Arch.mlp if arch is None else arch
if 'evaluate' in kwargs.keys():
evaluate = kwargs.pop('evaluate')
if "evaluate" in kwargs.keys():
evaluate = kwargs.pop("evaluate")
else:
if arch == Arch.mlp:
seq = kwargs['seq'] if 'seq' in kwargs.keys() else [len(inputs), 20, 20, 20, 20, len(outputs)]
evaluate = MLP(n_seq=seq, activation=Activation.swish, initialization=Initializer.kaiming_uniform,
weight_norm=True)
seq = (
kwargs["seq"]
if "seq" in kwargs.keys()
else [len(inputs), 20, 20, 20, 20, len(outputs)]
)
evaluate = MLP(
n_seq=seq,
activation=Activation.swish,
initialization=Initializer.kaiming_uniform,
weight_norm=True,
)
elif arch == Arch.toy:
evaluate = SimpleExpr("nothing")
elif arch == Arch.mlp_xl or arch == 'fc':
seq = kwargs['seq'] if 'seq' in kwargs.keys() else [len(inputs), 512, 512, 512, 512, 512, 512, len(outputs)]
evaluate = MLP(n_seq=seq, activation=Activation.silu, initialization=Initializer.kaiming_uniform,
weight_norm=True)
elif arch == Arch.mlp_xl or arch == "fc":
seq = (
kwargs["seq"]
if "seq" in kwargs.keys()
else [len(inputs), 512, 512, 512, 512, 512, 512, len(outputs)]
)
evaluate = MLP(
n_seq=seq,
activation=Activation.silu,
initialization=Initializer.kaiming_uniform,
weight_norm=True,
)
elif arch == Arch.single_var:
evaluate = SingleVar(initialization=kwargs.get('initialization', 1.))
evaluate = SingleVar(initialization=kwargs.get("initialization", 1.0))
elif arch == Arch.bounded_single_var:
evaluate = BoundedSingleVar(lower_bound=kwargs['lower_bound'], upper_bound=kwargs['upper_bound'])
evaluate = BoundedSingleVar(
lower_bound=kwargs["lower_bound"], upper_bound=kwargs["upper_bound"]
)
elif arch == Arch.siren:
seq = kwargs['seq'] if 'seq' in kwargs.keys() else [len(inputs), 512, 512, 512, 512, 512, 512, len(outputs)]
seq = (
kwargs["seq"]
if "seq" in kwargs.keys()
else [len(inputs), 512, 512, 512, 512, 512, 512, len(outputs)]
)
evaluate = Siren(n_seq=seq)
else:
logger.error(f'{arch} is not supported!')
raise NotImplementedError(f'{arch} is not supported!')
nn = NetNode(inputs=inputs, outputs=outputs, net=evaluate, name=name, *args, **kwargs)
logger.error(f"{arch} is not supported!")
raise NotImplementedError(f"{arch} is not supported!")
nn = NetNode(
inputs=inputs, outputs=outputs, net=evaluate, name=name, *args, **kwargs
)
return nn
def get_shared_net_node(shared_node: NetNode, inputs: Union[Tuple[str, ...], List[str]],
outputs: Union[Tuple[str, ...], List[str]], name=None, *args,
**kwargs) -> NetNode:
def get_shared_net_node(
shared_node: NetNode,
inputs: Union[Tuple[str, ...], List[str]],
outputs: Union[Tuple[str, ...], List[str]],
name=None,
*args,
**kwargs,
) -> NetNode:
"""Construct a netnode, the net of which is shared by a given netnode. One can specify different inputs and outputs
just like an independent netnode. However, the net parameters may have multiple references. Thus the step
operations during optimization should only be applied once.
@ -221,22 +290,29 @@ def get_shared_net_node(shared_node: NetNode, inputs: Union[Tuple[str, ...], Lis
:param kwargs:
:return:
"""
nn = NetNode(inputs, outputs, shared_node.net, is_reference=True, name=name, *args, **kwargs)
nn = NetNode(
inputs, outputs, shared_node.net, is_reference=True, name=name, *args, **kwargs
)
return nn
def get_inter_name(length: int, prefix: str):
return [prefix + f'_{i}' for i in range(length)]
return [prefix + f"_{i}" for i in range(length)]
class SimpleExpr(torch.nn.Module):
"""This class is for testing. One can override SimpleExper.forward to represent complex formulas."""
def __init__(self, expr, name='expr'):
def __init__(self, expr, name="expr"):
super().__init__()
self.evaluate = expr
self.name = name
self._placeholder = torch.nn.Parameter(torch.Tensor([0.0]))
def forward(self, x):
return self._placeholder + x[:, :1] * x[:, :1] / 2 + x[:, 1:] * x[:, 1:] / 2 - self._placeholder
return (
self._placeholder
+ x[:, :1] * x[:, :1] / 2
+ x[:, 1:] * x[:, 1:] / 2
- self._placeholder
)

44
idrlnet/callbacks.py
View File

@ -7,13 +7,13 @@ from torch.utils.tensorboard import SummaryWriter
from idrlnet.receivers import Receiver, Signal
from idrlnet.variable import Variables
__all__ = ['GradientReceiver', 'SummaryReceiver', 'HandleResultReceiver']
__all__ = ["GradientReceiver", "SummaryReceiver", "HandleResultReceiver"]
class GradientReceiver(Receiver):
"""Register the receiver to monitor gradient norm on the Tensorboard."""
def receive_notify(self, solver: 'Solver', message):
def receive_notify(self, solver: "Solver", message): # noqa
if not (Signal.TRAIN_PIPE_END in message):
return
for netnode in solver.netnodes:
@ -23,9 +23,11 @@ class GradientReceiver(Receiver):
for p in model.parameters():
param_norm = p.grad.data.norm(2)
total_norm += param_norm.item() ** 2
total_norm = total_norm ** (1. / 2)
total_norm = total_norm ** (1.0 / 2)
assert isinstance(solver.receivers[0], SummaryWriter)
solver.summary_receiver.add_scalar('gradient/total_norm', total_norm, solver.global_step)
solver.summary_receiver.add_scalar(
"gradient/total_norm", total_norm, solver.global_step
)
class SummaryReceiver(SummaryWriter, Receiver):
@ -34,15 +36,19 @@ class SummaryReceiver(SummaryWriter, Receiver):
def __init__(self, *args, **kwargs):
SummaryWriter.__init__(self, *args, **kwargs)
def receive_notify(self, solver: 'Solver', message: Dict):
def receive_notify(self, solver: "Solver", message: Dict): # noqa
if Signal.AFTER_COMPUTE_LOSS in message.keys():
loss_component = message[Signal.AFTER_COMPUTE_LOSS]
self.add_scalars('loss_overview', loss_component, solver.global_step)
self.add_scalars("loss_overview", loss_component, solver.global_step)
for key, value in loss_component.items():
self.add_scalar(f'loss_component/{key}', value, solver.global_step)
self.add_scalar(f"loss_component/{key}", value, solver.global_step)
if Signal.TRAIN_PIPE_END in message.keys():
for i, optimizer in enumerate(solver.optimizers):
self.add_scalar(f'optimizer/lr_{i}', optimizer.param_groups[0]['lr'], solver.global_step)
self.add_scalar(
f"optimizer/lr_{i}",
optimizer.param_groups[0]["lr"],
solver.global_step,
)
class HandleResultReceiver(Receiver):
@ -51,11 +57,13 @@ class HandleResultReceiver(Receiver):
def __init__(self, result_dir):
self.result_dir = result_dir
def receive_notify(self, solver: 'Solver', message: Dict):
def receive_notify(self, solver: "Solver", message: Dict): # noqa
if Signal.SOLVE_END in message.keys():
samples = solver.sample_variables_from_domains()
in_var, _, lambda_out = solver.generate_in_out_dict(samples)
pred_out_sample = solver.forward_through_all_graph(in_var, solver.outvar_dict_index)
pred_out_sample = solver.forward_through_all_graph(
in_var, solver.outvar_dict_index
)
diff_out_sample = {key: Variables() for key in pred_out_sample}
results_path = pathlib.Path(self.result_dir)
results_path.mkdir(exist_ok=True, parents=True)
@ -65,7 +73,15 @@ class HandleResultReceiver(Receiver):
pred_out_sample[key][_key] = samples[key][_key]
diff_out_sample[key][_key] = samples[key][_key]
else:
diff_out_sample[key][_key] = pred_out_sample[key][_key] - samples[key][_key]
samples[key].save(os.path.join(results_path, f'{key}_true'), ['vtu', 'np', 'csv'])
pred_out_sample[key].save(os.path.join(results_path, f'{key}_pred'), ['vtu', 'np', 'csv'])
diff_out_sample[key].save(os.path.join(results_path, f'{key}_diff'), ['vtu', 'np', 'csv'])
diff_out_sample[key][_key] = (
pred_out_sample[key][_key] - samples[key][_key]
)
samples[key].save(
os.path.join(results_path, f"{key}_true"), ["vtu", "np", "csv"]
)
pred_out_sample[key].save(
os.path.join(results_path, f"{key}_pred"), ["vtu", "np", "csv"]
)
diff_out_sample[key].save(
os.path.join(results_path, f"{key}_diff"), ["vtu", "np", "csv"]
)

96
idrlnet/data.py
View File

@ -36,6 +36,7 @@ class DataNode(Node):
:param args:
:param kwargs:
"""
counter = 0
@property
@ -87,18 +88,27 @@ class DataNode(Node):
try:
output_vars[key] = lambdify_np(value, input_vars)(**input_vars)
except:
logger.error('unsupported constraints type.')
raise ValueError('unsupported constraints type.')
logger.error("unsupported constraints type.")
raise ValueError("unsupported constraints type.")
try:
return Variables({**input_vars, **output_vars}).to_torch_tensor_()
except:
return Variables({**input_vars, **output_vars})
def __init__(self, inputs: Union[Tuple[str, ...], List[str]], outputs: Union[Tuple[str, ...], List[str]],
sample_fn: Callable, loss_fn: str = 'square', lambda_outputs: Union[Tuple[str, ...], List[str]] = None,
name=None, sigma=1.0, var_sigma=False,
*args, **kwargs):
def __init__(
self,
inputs: Union[Tuple[str, ...], List[str]],
outputs: Union[Tuple[str, ...], List[str]],
sample_fn: Callable,
loss_fn: str = "square",
lambda_outputs: Union[Tuple[str, ...], List[str]] = None,
name=None,
sigma=1.0,
var_sigma=False,
*args,
**kwargs,
):
self.inputs: Union[Tuple, List[str]] = inputs
self.outputs: Union[Tuple, List[str]] = outputs
self.lambda_outputs = lambda_outputs
@ -113,13 +123,22 @@ class DataNode(Node):
self.loss_fn = loss_fn
def __str__(self):
str_list = ["DataNode properties:\n"
"lambda_outputs: {}\n".format(self.lambda_outputs)]
return super().__str__() + ''.join(str_list)
str_list = [
"DataNode properties:\n" "lambda_outputs: {}\n".format(self.lambda_outputs)
]
return super().__str__() + "".join(str_list)
def get_data_node(fun: Callable, name=None, loss_fn='square', sigma=1., var_sigma=False, *args, **kwargs) -> DataNode:
""" Construct a datanode from sampling functions.
def get_data_node(
fun: Callable,
name=None,
loss_fn="square",
sigma=1.0,
var_sigma=False,
*args,
**kwargs,
) -> DataNode:
"""Construct a datanode from sampling functions.
:param fun: Each call of the Callable object should return a sampling dict.
:type fun: Callable
@ -135,26 +154,56 @@ def get_data_node(fun: Callable, name=None, loss_fn='square', sigma=1., var_sigm
in_, out_ = fun()
inputs = list(in_.keys())
outputs = list(out_.keys())
lambda_outputs = list(filter(lambda x: x.startswith('lambda_'), outputs))
outputs = list(filter(lambda x: not x.startswith('lambda_'), outputs))
name = (fun.__name__ if inspect.isfunction(fun) else type(fun).__name__) if name is None else name
dn = DataNode(inputs=inputs, outputs=outputs, sample_fn=fun, lambda_outputs=lambda_outputs, loss_fn=loss_fn,
name=name, sigma=sigma, var_sigma=var_sigma, *args, **kwargs)
lambda_outputs = list(filter(lambda x: x.startswith("lambda_"), outputs))
outputs = list(filter(lambda x: not x.startswith("lambda_"), outputs))
name = (
(fun.__name__ if inspect.isfunction(fun) else type(fun).__name__)
if name is None
else name
)
dn = DataNode(
inputs=inputs,
outputs=outputs,
sample_fn=fun,
lambda_outputs=lambda_outputs,
loss_fn=loss_fn,
name=name,
sigma=sigma,
var_sigma=var_sigma,
*args,
**kwargs,
)
return dn
def datanode(_fun: Callable = None, name=None, loss_fn='square', sigma=1., var_sigma=False, **kwargs):
def datanode(
_fun: Callable = None,
name=None,
loss_fn="square",
sigma=1.0,
var_sigma=False,
**kwargs,
):
"""As an alternative, decorate Callable classes as Datanode."""
def wrap(fun):
if inspect.isclass(fun):
assert issubclass(fun, SampleDomain), f"{fun} should be subclass of .data.Sample"
assert issubclass(
fun, SampleDomain
), f"{fun} should be subclass of .data.Sample"
fun = fun()
assert isinstance(fun, Callable)
@functools.wraps(fun)
def wrapped_fun():
dn = get_data_node(fun, name=name, loss_fn=loss_fn, sigma=sigma, var_sigma=var_sigma, **kwargs)
dn = get_data_node(
fun,
name=name,
loss_fn=loss_fn,
sigma=sigma,
var_sigma=var_sigma,
**kwargs,
)
return dn
return wrapped_fun
@ -163,9 +212,12 @@ def datanode(_fun: Callable = None, name=None, loss_fn='square', sigma=1., var_s
def get_data_nodes(funs: List[Callable], *args, **kwargs) -> Tuple[DataNode]:
if 'names' in kwargs:
names = kwargs.pop('names')
return tuple(get_data_node(fun, name=name, *args, **kwargs) for fun, name in zip(funs, names))
if "names" in kwargs:
names = kwargs.pop("names")
return tuple(
get_data_node(fun, name=name, *args, **kwargs)
for fun, name in zip(funs, names)
)
else:
return tuple(get_data_node(fun, *args, **kwargs) for fun in funs)

190
idrlnet/geo_utils/geo.py
View File

@ -23,7 +23,7 @@ class CheckMeta(type):
class AbsGeoObj(metaclass=abc.ABCMeta):
@abc.abstractmethod
def rotation(self, angle: float, axis: str = 'z'):
def rotation(self, angle: float, axis: str = "z"):
pass
@abc.abstractmethod
@ -43,16 +43,24 @@ class Edge(AbsGeoObj):
@property
def axes(self) -> List[str]:
return [key for key in self.functions if not key.startswith('normal')]
return [key for key in self.functions if not key.startswith("normal")]
def rotation(self, angle: float, axis: str = 'z'):
assert len(self.axes) > 1, 'Cannot rotate a object with dim<2'
def rotation(self, angle: float, axis: str = "z"):
assert len(self.axes) > 1, "Cannot rotate a object with dim<2"
rotated_dims = [key for key in self.axes if key != axis]
rd1, rd2, n = rotated_dims[0], rotated_dims[1], 'normal_'
self.functions[rd1] = (cos(angle) * self.functions[rd1] - sin(angle) * self.functions[rd2])
self.functions[n + rd1] = cos(angle) * self.functions[n + rd1] - sin(angle) * self.functions[n + rd2]
self.functions[rd2] = (sin(angle) * self.functions[rd1] + cos(angle) * self.functions[rd2])
self.functions[n + rd2] = sin(angle) * self.functions[n + rd1] + cos(angle) * self.functions[n + rd2]
rd1, rd2, n = rotated_dims[0], rotated_dims[1], "normal_"
self.functions[rd1] = (
cos(angle) * self.functions[rd1] - sin(angle) * self.functions[rd2]
)
self.functions[n + rd1] = (
cos(angle) * self.functions[n + rd1] - sin(angle) * self.functions[n + rd2]
)
self.functions[rd2] = (
sin(angle) * self.functions[rd1] + cos(angle) * self.functions[rd2]
)
self.functions[n + rd2] = (
sin(angle) * self.functions[n + rd1] + cos(angle) * self.functions[n + rd2]
)
return self
def scaling(self, scale: float):
@ -62,20 +70,28 @@ class Edge(AbsGeoObj):
return self
def translation(self, direction):
assert len(direction) == len(self.axes), 'Moving direction must have the save dimension with the object'
assert len(direction) == len(
self.axes
), "Moving direction must have the save dimension with the object"
for key, x in zip(self.axes, direction):
self.functions[key] += x
return self
def sample(self, density: int, param_ranges=None, low_discrepancy=False) -> Dict[str, np.ndarray]:
def sample(
self, density: int, param_ranges=None, low_discrepancy=False
) -> Dict[str, np.ndarray]:
param_ranges = {} if param_ranges is None else param_ranges
inputs = {**self.ranges, **param_ranges}.keys()
area_fn = lambdify_np(self.area, inputs)
param_points = _ranged_sample(100, ranges={**self.ranges, **param_ranges})
nr_points = int(density * (np.mean(area_fn(**param_points))))
lambdify_functions = {'area': lambda **x: area_fn(**x) / next(iter(x.values())).shape[0]}
param_points = _ranged_sample(nr_points, {**self.ranges, **param_ranges}, low_discrepancy)
lambdify_functions = {
"area": lambda **x: area_fn(**x) / next(iter(x.values())).shape[0]
}
param_points = _ranged_sample(
nr_points, {**self.ranges, **param_ranges}, low_discrepancy
)
data_var = {}
for key, function in self.functions.items():
@ -105,104 +121,138 @@ class Geometry(AbsGeoObj, metaclass=AbsCheckMix):
if type(self) in [Geometry, Geometry1D, Geometry2D, Geometry3D]:
return
if self.edges is None:
raise NotImplementedError('Geometry must define edges')
raise NotImplementedError("Geometry must define edges")
if self.bounds is None:
raise NotImplementedError('Geometry must define bounds')
raise NotImplementedError("Geometry must define bounds")
if self.sdf is None:
raise NotImplementedError('Geometry must define sdf')
raise NotImplementedError("Geometry must define sdf")
@property
def axes(self) -> List[str]:
return self.edges[0].axes
def translation(self, direction: Union[List, Tuple]) -> 'Geometry':
def translation(self, direction: Union[List, Tuple]) -> "Geometry":
assert len(direction) == len(self.axes)
[edge.translation(direction) for edge in self.edges]
self.sdf = self.sdf.subs([(Symbol(dim), Symbol(dim) - x) for dim, x in zip(self.axes, direction)])
self.bounds = {dim: (self.bounds[dim][0] + x, self.bounds[dim][1] + x) for dim, x in zip(self.axes, direction)}
self.sdf = self.sdf.subs(
[(Symbol(dim), Symbol(dim) - x) for dim, x in zip(self.axes, direction)]
)
self.bounds = {
dim: (self.bounds[dim][0] + x, self.bounds[dim][1] + x)
for dim, x in zip(self.axes, direction)
}
return self
def rotation(self, angle: float, axis: str = 'z', center=None) -> 'Geometry':
def rotation(self, angle: float, axis: str = "z", center=None) -> "Geometry":
if center is not None:
self.translation([-x for x in center])
[edge.rotation(angle, axis) for edge in self.edges]
rotated_dims = [key for key in self.axes if key != axis]
sp_0 = Symbol(rotated_dims[0])
_sp_0 = Symbol('tmp_0')
_sp_0 = Symbol("tmp_0")
sp_1 = Symbol(rotated_dims[1])
_sp_1 = Symbol('tmp_1')
self.sdf = self.sdf.subs({sp_0: cos(angle) * _sp_0 + sin(angle) * _sp_1,
sp_1: - sin(angle) * _sp_0 + cos(angle) * _sp_1})
_sp_1 = Symbol("tmp_1")
self.sdf = self.sdf.subs(
{
sp_0: cos(angle) * _sp_0 + sin(angle) * _sp_1,
sp_1: -sin(angle) * _sp_0 + cos(angle) * _sp_1,
}
)
self.sdf = self.sdf.subs({_sp_0: sp_0, _sp_1: sp_1})
self.bounds[rotated_dims[0]], self.bounds[rotated_dims[1]] = _rotate_rec(self.bounds[rotated_dims[0]],
self.bounds[rotated_dims[1]],
angle=angle)
self.bounds[rotated_dims[0]], self.bounds[rotated_dims[1]] = _rotate_rec(
self.bounds[rotated_dims[0]], self.bounds[rotated_dims[1]], angle=angle
)
if center is not None:
self.translation(center)
return self
def scaling(self, scale: float, center: Tuple = None) -> 'Geometry':
assert scale > 0, 'scaling must be positive'
def scaling(self, scale: float, center: Tuple = None) -> "Geometry":
assert scale > 0, "scaling must be positive"
if center is not None:
self.translation(tuple([-x for x in center]))
[edge.scaling(scale) for edge in self.edges]
self.sdf = self.sdf.subs({Symbol(dim): Symbol(dim) / scale for dim in self.axes})
self.sdf = self.sdf.subs(
{Symbol(dim): Symbol(dim) / scale for dim in self.axes}
)
self.sdf = scale * self.sdf
for dim in self.axes:
self.bounds[dim] = (self.bounds[dim][0] * scale, self.bounds[dim][1] * scale)
self.bounds[dim] = (
self.bounds[dim][0] * scale,
self.bounds[dim][1] * scale,
)
if center is not None:
self.translation(center)
return self
def duplicate(self) -> 'Geometry':
def duplicate(self) -> "Geometry":
return copy.deepcopy(self)
def sample_boundary(self, density: int, sieve=None, param_ranges: Dict = None, low_discrepancy=False) -> Dict[
str, np.ndarray]:
def sample_boundary(
self, density: int, sieve=None, param_ranges: Dict = None, low_discrepancy=False
) -> Dict[str, np.ndarray]:
param_ranges = dict() if param_ranges is None else param_ranges
points_list = [edge.sample(density, param_ranges, low_discrepancy) for edge in
self.edges]
points = reduce(lambda e1, e2: {_k: np.concatenate([e1[_k], e2[_k]], axis=0) for _k in e1}, points_list)
points_list = [
edge.sample(density, param_ranges, low_discrepancy) for edge in self.edges
]
points = reduce(
lambda e1, e2: {_k: np.concatenate([e1[_k], e2[_k]], axis=0) for _k in e1},
points_list,
)
points = self._sieve_points(points, sieve, sign=-1, tol=1e-4)
return points
def _sieve_points(self, points, sieve, tol=1e-4, sign=1.):
def _sieve_points(self, points, sieve, tol=1e-4, sign=1.0):
sdf_fn = lambdify_np(self.sdf, points.keys())
points['sdf'] = sdf_fn(**points)
points["sdf"] = sdf_fn(**points)
criteria_fn = lambdify_np(True if sieve is None else sieve, points.keys())
criteria_index = np.logical_and(np.greater(points['sdf'], -tol), criteria_fn(**points))
criteria_index = np.logical_and(
np.greater(points["sdf"], -tol), criteria_fn(**points)
)
if sign == -1:
criteria_index = np.logical_and(np.less(points['sdf'], tol), criteria_index)
criteria_index = np.logical_and(np.less(points["sdf"], tol), criteria_index)
points = {k: v[criteria_index[:, 0], :] for k, v in points.items()}
return points
def sample_interior(self, density: int, bounds: Dict = None, sieve=None, param_ranges: Dict = None,
low_discrepancy=False) -> Dict[str, np.ndarray]:
def sample_interior(
self,
density: int,
bounds: Dict = None,
sieve=None,
param_ranges: Dict = None,
low_discrepancy=False,
) -> Dict[str, np.ndarray]:
bounds = self.bounds if bounds is None else bounds
bounds = {Symbol(key) if isinstance(key, str) else key: value for key, value in bounds.items()}
bounds = {
Symbol(key) if isinstance(key, str) else key: value
for key, value in bounds.items()
}
param_ranges = {} if param_ranges is None else param_ranges
measure = np.prod([value[1] - value[0] for value in bounds.values()])
nr_points = int(measure * density)
points = _ranged_sample(nr_points, {**bounds, **param_ranges}, low_discrepancy=low_discrepancy)
points = _ranged_sample(
nr_points, {**bounds, **param_ranges}, low_discrepancy=low_discrepancy
)
assert len(points.keys()) >= 0, "No points have been sampled!"
points = self._sieve_points(points, sieve, tol=0.)
points = self._sieve_points(points, sieve, tol=0.0)
points['area'] = np.zeros_like(points['sdf']) + (1.0 / density)
points["area"] = np.zeros_like(points["sdf"]) + (1.0 / density)
return points
def __add__(self, other: 'Geometry') -> 'Geometry':
def __add__(self, other: "Geometry") -> "Geometry":
geo = self.generate_geo_obj(other)
geo.edges = self.edges + other.edges
geo.sdf = WrapMax(self.sdf, other.sdf)
geo.bounds = dict()
for key, value in self.bounds.items():
geo.bounds[key] = (
min(other.bounds[key][0], self.bounds[key][0]), max(other.bounds[key][1], self.bounds[key][1]))
min(other.bounds[key][0], self.bounds[key][0]),
max(other.bounds[key][1], self.bounds[key][1]),
)
return geo
def generate_geo_obj(self, other=None):
@ -219,7 +269,7 @@ class Geometry(AbsGeoObj, metaclass=AbsCheckMix):
raise TypeError
return geo
def __sub__(self, other: 'Geometry') -> 'Geometry':
def __sub__(self, other: "Geometry") -> "Geometry":
geo = self.generate_geo_obj(other)
geo.edges = self.edges + [_inverse_edge(edge) for edge in other.edges]
@ -229,22 +279,24 @@ class Geometry(AbsGeoObj, metaclass=AbsCheckMix):
geo.bounds[key] = (self.bounds[key][0], self.bounds[key][1])
return geo
def __invert__(self) -> 'Geometry':
def __invert__(self) -> "Geometry":
geo = self.generate_geo_obj()
geo.edges = [_inverse_edge(edge) for edge in self.edges]
geo.sdf = WrapMul(-1, self.sdf)
for key, value in self.bounds.items():
geo.bounds[key] = (-float('inf'), float('inf'))
geo.bounds[key] = (-float("inf"), float("inf"))
return geo
def __and__(self, other: 'Geometry') -> 'Geometry':
def __and__(self, other: "Geometry") -> "Geometry":
geo = self.generate_geo_obj(other)
geo.edges = self.edges + other.edges
geo.sdf = WrapMin(self.sdf, other.sdf)
geo.bounds = dict()
for key, value in self.bounds.items():
geo.bounds[key] = (
max(other.bounds[key][0], self.bounds[key][0]), min(other.bounds[key][1], self.bounds[key][1]))
max(other.bounds[key][0], self.bounds[key][0]),
min(other.bounds[key][1], self.bounds[key][1]),
)
return geo
@ -261,14 +313,16 @@ class Geometry3D(Geometry):
# todo: sample in cuda device
def _ranged_sample(batch_size: int, ranges: Dict, low_discrepancy: bool = False) -> Dict[str, np.ndarray]:
def _ranged_sample(
batch_size: int, ranges: Dict, low_discrepancy: bool = False
) -> Dict[str, np.ndarray]:
points = dict()
low_discrepancy_stack = []
for key, value in ranges.items():
if isinstance(value, (float, int)):
samples = np.ones((batch_size, 1)) * value
elif isinstance(value, tuple):
assert len(value) == 2, 'Tuple: length of range should be 2!'
assert len(value) == 2, "Tuple: length of range should be 2!"
if low_discrepancy:
low_discrepancy_stack.append((key.name, value))
continue
@ -277,10 +331,12 @@ def _ranged_sample(batch_size: int, ranges: Dict, low_discrepancy: bool = False)
elif isinstance(value, collections.Callable):
samples = value(batch_size)
else:
raise TypeError(f'range type {type(value)} not supported!')
raise TypeError(f"range type {type(value)} not supported!")
points[key.name] = samples
if low_discrepancy:
low_discrepancy_points_dict = _low_discrepancy_sampling(batch_size, low_discrepancy_stack)
low_discrepancy_points_dict = _low_discrepancy_sampling(
batch_size, low_discrepancy_stack
)
points.update(low_discrepancy_points_dict)
for key, v in points.items():
points[key] = v.astype(np.float64)
@ -289,8 +345,8 @@ def _ranged_sample(batch_size: int, ranges: Dict, low_discrepancy: bool = False)
def _rotate_rec(x: Tuple, y: Tuple, angle: float):
points = itertools.product(x, y)
min_x, min_y = float('inf'), float('inf')
max_x, max_y = -float('inf'), -float('inf')
min_x, min_y = float("inf"), float("inf")
max_x, max_y = -float("inf"), -float("inf")
try:
for x, y in points:
new_x = cos(angle) * x - sin(angle) * y
@ -327,7 +383,11 @@ def _low_discrepancy_sampling(n_points, low_discrepancy_stack: List[Tuple]):
for i in range(len(q) - 1):
for j in range(dims):
x[q[i]:q[i + 1], j] = (x[q[i]:q[i + 1], j] - rmin[j]) / 2 + rmin[j] + ((i >> j) & 1) * bi_range
x[q[i] : q[i + 1], j] = (
(x[q[i] : q[i + 1], j] - rmin[j]) / 2
+ rmin[j]
+ ((i >> j) & 1) * bi_range
)
rmin_sub = [v + bi_range * ((i >> j) & 1) for j, v in enumerate(rmin)]
uniform(x, q[i], q[i + 1], rmin_sub, bi_range=bi_range / 2)
return x
@ -337,11 +397,15 @@ def _low_discrepancy_sampling(n_points, low_discrepancy_stack: List[Tuple]):
uniform(points, start=0, end=n, rmin=[0] * dim)
points_dict = {}
for i, (key, bi_range) in enumerate(low_discrepancy_stack):
points_dict[key] = points[:, i:i + 1] * (bi_range[1] - bi_range[0]) + bi_range[0]
points_dict[key] = (
points[:, i : i + 1] * (bi_range[1] - bi_range[0]) + bi_range[0]
)
return points_dict
def _inverse_edge(edge: Edge):
new_functions = {k: -v if k.startswith('normal_') else v for k, v in edge.functions.items()}
new_functions = {
k: -v if k.startswith("normal_") else v for k, v in edge.functions.items()
}
edge = Edge(functions=new_functions, ranges=edge.ranges, area=edge.area)
return edge

54
idrlnet/geo_utils/geo_builder.py
View File

@ -1,28 +1,42 @@
""" A simple factory for constructing Geometric Objects"""
from .geo import Geometry
from .geo_obj import Line1D, Line, Tube2D, Rectangle, Circle, Plane, Tube3D, Box, Sphere, Cylinder, CircularTube, \
Triangle, Heart
from .geo_obj import (
Line1D,
Line,
Tube2D,
Rectangle,
Circle,
Plane,
Tube3D,
Box,
Sphere,
Cylinder,
CircularTube,
Triangle,
Heart,
)
__all__ = ['GeometryBuilder']
__all__ = ["GeometryBuilder"]
class GeometryBuilder:
GEOMAP = {'Line1D': Line1D,
'Line': Line,
'Rectangle': Rectangle,
'Circle': Circle,
'Channel2D': Tube2D,
'Plane': Plane,
'Sphere': Sphere,
'Box': Box,
'Channel': Tube3D,
'Channel3D': Tube3D,
'Cylinder': Cylinder,
'CircularTube': CircularTube,
'Triangle': Triangle,
'Heart': Heart,
}
GEOMAP = {
"Line1D": Line1D,
"Line": Line,
"Rectangle": Rectangle,
"Circle": Circle,
"Channel2D": Tube2D,
"Plane": Plane,
"Sphere": Sphere,
"Box": Box,
"Channel": Tube3D,
"Channel3D": Tube3D,
"Cylinder": Cylinder,
"CircularTube": CircularTube,
"Triangle": Triangle,
"Heart": Heart,
}
@staticmethod
def get_geometry(geo: str, **kwargs) -> Geometry:
@ -33,5 +47,7 @@ class GeometryBuilder:
:return: A geometry object with given kwargs.
:rtype: Geometry
"""
assert geo in GeometryBuilder.GEOMAP.keys(), f'The geometry {geo} not implemented!'
assert (
geo in GeometryBuilder.GEOMAP.keys()
), f"The geometry {geo} not implemented!"
return GeometryBuilder.GEOMAP[geo](**kwargs)

849
idrlnet/geo_utils/geo_obj.py
View File

File diff suppressed because it is too large Load Diff

68
idrlnet/geo_utils/sympy_np.py
View File

@ -10,7 +10,7 @@ from functools import reduce
import collections
from sympy import Max, Min, Mul
__all__ = ['lambdify_np']
__all__ = ["lambdify_np"]
class WrapSympy:
@ -20,10 +20,14 @@ class WrapSympy:
def _wrapper_guide(args):
func_1 = args[0]
func_2 = args[1]
cond_1 = (isinstance(func_1, WrapSympy) and not func_1.is_sympy)
cond_1 = isinstance(func_1, WrapSympy) and not func_1.is_sympy
cond_2 = isinstance(func_2, WrapSympy) and not func_2.is_sympy
cond_3 = (not isinstance(func_1, WrapSympy)) and isinstance(func_1, collections.Callable)
cond_4 = (not isinstance(func_2, WrapSympy)) and isinstance(func_2, collections.Callable)
cond_3 = (not isinstance(func_1, WrapSympy)) and isinstance(
func_1, collections.Callable
)
cond_4 = (not isinstance(func_2, WrapSympy)) and isinstance(
func_2, collections.Callable
)
return cond_1 or cond_2 or cond_3 or cond_4, func_1, func_2
@ -111,8 +115,11 @@ def _try_float(fn):
def _constant_bool(boolean: bool):
def fn(**x):
return np.ones_like(next(iter(x.items()))[1], dtype=bool) if boolean else np.zeros_like(
next(iter(x.items()))[1], dtype=bool)
return (
np.ones_like(next(iter(x.items()))[1], dtype=bool)
if boolean
else np.zeros_like(next(iter(x.items()))[1], dtype=bool)
)
return fn
@ -128,7 +135,7 @@ def lambdify_np(f, r: Iterable):
if isinstance(r, dict):
r = r.keys()
if isinstance(f, WrapSympy) and f.is_sympy:
lambdify_f = lambdify([k for k in r], f, [PLACEHOLDER, 'numpy'])
lambdify_f = lambdify([k for k in r], f, [PLACEHOLDER, "numpy"])
lambdify_f.input_keys = [k for k in r]
return lambdify_f
if isinstance(f, WrapSympy) and not f.is_sympy:
@ -141,30 +148,31 @@ def lambdify_np(f, r: Iterable):
if isinstance(f, float):
return _constant_float(f)
else:
lambdify_f = lambdify([k for k in r], f, [PLACEHOLDER, 'numpy'])
lambdify_f = lambdify([k for k in r], f, [PLACEHOLDER, "numpy"])
lambdify_f.input_keys = [k for k in r]
return lambdify_f
PLACEHOLDER = {'amin': lambda x: reduce(lambda y, z: np.minimum(y, z), x),
'amax': lambda x: reduce(lambda y, z: np.maximum(y, z), x),
'Min': lambda *x: reduce(lambda y, z: np.minimum(y, z), x),
'Max': lambda *x: reduce(lambda y, z: np.maximum(y, z), x),
'Heaviside': lambda x: np.heaviside(x, 0),
'equal': lambda x, y: np.isclose(x, y),
'Xor': np.logical_xor,
'cos': np.cos,
'sin': np.sin,
'tan': np.tan,
'exp': np.exp,
'sqrt': np.sqrt,
'log': np.log,
'sinh': np.sinh,
'cosh': np.cosh,
'tanh': np.tanh,
'asin': np.arcsin,
'acos': np.arccos,
'atan': np.arctan,
'Abs': np.abs,
'DiracDelta': np.zeros_like,
}
PLACEHOLDER = {
"amin": lambda x: reduce(lambda y, z: np.minimum(y, z), x),
"amax": lambda x: reduce(lambda y, z: np.maximum(y, z), x),
"Min": lambda *x: reduce(lambda y, z: np.minimum(y, z), x),
"Max": lambda *x: reduce(lambda y, z: np.maximum(y, z), x),
"Heaviside": lambda x: np.heaviside(x, 0),
"equal": lambda x, y: np.isclose(x, y),
"Xor": np.logical_xor,
"cos": np.cos,
"sin": np.sin,
"tan": np.tan,
"exp": np.exp,
"sqrt": np.sqrt,
"log": np.log,
"sinh": np.sinh,
"cosh": np.cosh,
"tanh": np.tanh,
"asin": np.arcsin,
"acos": np.arccos,
"atan": np.arctan,
"Abs": np.abs,
"DiracDelta": np.zeros_like,
}

139
idrlnet/graph.py
View File

@ -13,15 +13,15 @@ from idrlnet.header import logger, DIFF_SYMBOL
from idrlnet.pde import PdeNode
from idrlnet.net import NetNode
__all__ = ['ComputableNodeList', 'Vertex', 'VertexTaskPipeline']
x, y = sp.symbols('x y')
__all__ = ["ComputableNodeList", "Vertex", "VertexTaskPipeline"]
x, y = sp.symbols("x y")
ComputableNodeList = [List[Union[PdeNode, NetNode]]]
class Vertex(Node):
counter = 0
def __init__(self, pre=None, next=None, node=None, ntype='c'):
def __init__(self, pre=None, next=None, node=None, ntype="c"):
node = Node() if node is None else node
self.__dict__ = node.__dict__.copy()
self.index = type(self).counter
@ -29,7 +29,7 @@ class Vertex(Node):
self.pre = pre if pre is not None else set()
self.next = next if pre is not None else set()
self.ntype = ntype
assert self.ntype in ('d', 'c', 'r')
assert self.ntype in ("d", "c", "r")
def __eq__(self, other):
return self.index == other.index
@ -38,8 +38,11 @@ class Vertex(Node):
return self.index
def __str__(self):
info = f"index: {self.index}\n" + f"pre: {[node.index for node in self.pre]}\n" \
+ f"next: {[node.index for node in self.next]}\n"
info = (
f"index: {self.index}\n"
+ f"pre: {[node.index for node in self.pre]}\n"
+ f"next: {[node.index for node in self.next]}\n"
)
return super().__str__() + info
@ -54,7 +57,9 @@ class VertexTaskPipeline:
def evaluation_order_list(self, evaluation_order_list):
self._evaluation_order_list = evaluation_order_list
def __init__(self, nodes: ComputableNodeList, invar: Variables, req_names: List[str]):
def __init__(
self, nodes: ComputableNodeList, invar: Variables, req_names: List[str]
):
self.nodes = nodes
self.req_names = req_names
self.computable = set(invar.keys())
@ -74,14 +79,14 @@ class VertexTaskPipeline:
final_graph_node.inputs = [req_name]
final_graph_node.derivatives = tuple()
final_graph_node.outputs = tuple()
final_graph_node.name = f'<{req_name}>'
final_graph_node.ntype = 'r'
final_graph_node.name = f"<{req_name}>"
final_graph_node.ntype = "r"
graph_nodes.add(final_graph_node)
req_name_dict[req_name].append(final_graph_node)
required_stack.append(final_graph_node)
final_graph_node.evaluate = lambda x: x
logger.info('Constructing computation graph...')
logger.info("Constructing computation graph...")
while len(req_name_dict) > 0:
to_be_removed = set()
to_be_added = defaultdict(list)
@ -96,14 +101,20 @@ class VertexTaskPipeline:
continue
for output in gn.outputs:
output = tuple(output.split(DIFF_SYMBOL))
if len(output) <= len(req_name) and req_name[:len(output)] == output and len(
output) > match_score:
if (
len(output) <= len(req_name)
and req_name[: len(output)] == output
and len(output) > match_score
):
match_score = len(output)
match_gn = gn
for p_in in invar.keys():
p_in = tuple(p_in.split(DIFF_SYMBOL))
if len(p_in) <= len(req_name) and req_name[:len(p_in)] == p_in and len(
p_in) > match_score:
if (
len(p_in) <= len(req_name)
and req_name[: len(p_in)] == p_in
and len(p_in) > match_score
):
match_score = len(p_in)
match_gn = None
for sub_gn in req_name_dict[DIFF_SYMBOL.join(req_name)]:
@ -112,9 +123,13 @@ class VertexTaskPipeline:
raise Exception("Can't be computed: " + DIFF_SYMBOL.join(req_name))
elif match_gn is not None:
for sub_gn in req_name_dict[DIFF_SYMBOL.join(req_name)]:
logger.info(f'{sub_gn.name}.{DIFF_SYMBOL.join(req_name)} <---- {match_gn.name}')
logger.info(
f"{sub_gn.name}.{DIFF_SYMBOL.join(req_name)} <---- {match_gn.name}"
)
match_gn.next.add(sub_gn)
self.egde_data[(match_gn.name, sub_gn.name)].add(DIFF_SYMBOL.join(req_name))
self.egde_data[(match_gn.name, sub_gn.name)].add(
DIFF_SYMBOL.join(req_name)
)
required_stack.append(match_gn)
for sub_gn in req_name_dict[DIFF_SYMBOL.join(req_name)]:
sub_gn.pre.add(match_gn)
@ -148,51 +163,91 @@ class VertexTaskPipeline:
node.name = key
node.outputs = (key,)
node.inputs = tuple()
node.ntype = 'd'
node.ntype = "d"
self._graph_node_table[key] = node
logger.info('Computation graph constructed.')
logger.info("Computation graph constructed.")
def operation_order(self, invar: Variables):
for node in self.evaluation_order_list:
if not set(node.derivatives).issubset(invar.keys()):
invar.differentiate_(independent_var=invar, required_derivatives=node.derivatives)
invar.update(node.evaluate({**invar.subset(node.inputs), **invar.subset(node.derivatives)}))
invar.differentiate_(
independent_var=invar, required_derivatives=node.derivatives
)
invar.update(
node.evaluate(
{**invar.subset(node.inputs), **invar.subset(node.derivatives)}
)
)
def forward_pipeline(self, invar: Variables, req_names: List[str] = None) -> Variables:
def forward_pipeline(
self, invar: Variables, req_names: List[str] = None
) -> Variables:
if req_names is None or set(req_names).issubset(set(self.computable)):
outvar = copy(invar)
self.operation_order(outvar)
return outvar.subset(self.req_names if req_names is None else req_names)
else:
logger.info('The existing graph fails. Construct a temporary graph...')
return VertexTaskPipeline(self.nodes, invar, req_names).forward_pipeline(invar)
logger.info("The existing graph fails. Construct a temporary graph...")
return VertexTaskPipeline(self.nodes, invar, req_names).forward_pipeline(
invar
)
def to_json(self):
pass
def display(self, filename: str = None):
_, ax = plt.subplots(1, 1, figsize=(8, 8))
ax.axis('off')
ax.axis("off")
pos = nx.spring_layout(self.G, k=10 / (math.sqrt(self.G.order()) + 0.1))
nx.draw_networkx_nodes(self.G, pos,
nodelist=list(
node for node in self.G.nodes if self._graph_node_table[node].ntype == 'c'),
cmap=plt.get_cmap('jet'),
node_size=1300, node_color="pink", alpha=0.5)
nx.draw_networkx_nodes(self.G, pos,
nodelist=list(
node for node in self.G.nodes if self._graph_node_table[node].ntype == 'r'),
cmap=plt.get_cmap('jet'),
node_size=1300, node_color="green", alpha=0.3)
nx.draw_networkx_nodes(self.G, pos,
nodelist=list(
node for node in self.G.nodes if self._graph_node_table[node].ntype == 'd'),
cmap=plt.get_cmap('jet'),
node_size=1300, node_color="blue", alpha=0.3)
nx.draw_networkx_edges(self.G, pos, edge_color='r', arrows=True, arrowsize=30, arrowstyle="-|>")
nx.draw_networkx_nodes(
self.G,
pos,
nodelist=list(
node
for node in self.G.nodes
if self._graph_node_table[node].ntype == "c"
),
cmap=plt.get_cmap("jet"),
node_size=1300,
node_color="pink",
alpha=0.5,
)
nx.draw_networkx_nodes(
self.G,
pos,
nodelist=list(
node
for node in self.G.nodes
if self._graph_node_table[node].ntype == "r"
),
cmap=plt.get_cmap("jet"),
node_size=1300,
node_color="green",
alpha=0.3,
)
nx.draw_networkx_nodes(
self.G,
pos,
nodelist=list(
node
for node in self.G.nodes
if self._graph_node_table[node].ntype == "d"
),
cmap=plt.get_cmap("jet"),
node_size=1300,
node_color="blue",
alpha=0.3,
)
nx.draw_networkx_edges(
self.G, pos, edge_color="r", arrows=True, arrowsize=30, arrowstyle="-|>"
)
nx.draw_networkx_labels(self.G, pos)
nx.draw_networkx_edge_labels(self.G, pos, edge_labels={k: ", ".join(v) for k, v in self.egde_data.items()},
font_size=10)
nx.draw_networkx_edge_labels(
self.G,
pos,
edge_labels={k: ", ".join(v) for k, v in self.egde_data.items()},
font_size=10,
)
if filename is None:
plt.show()
else:

13
idrlnet/header.py
View File

@ -14,7 +14,7 @@ class TestFun:
self.registered.append(self)
def __call__(self, *args, **kwargs):
print(str(self.fun.__name__).center(50, '*'))
print(str(self.fun.__name__).center(50, "*"))
self.fun()
@staticmethod
@ -36,7 +36,12 @@ def testmemo(fun):
testmemo.memo = set()
log_format = '[%(asctime)s] [%(levelname)s] %(message)s'
handlers = [logging.FileHandler('train.log', mode='a'), logging.StreamHandler()]
logging.basicConfig(format=log_format, level=logging.INFO, datefmt='%d-%b-%y %H:%M:%S', handlers=handlers)
log_format = "[%(asctime)s] [%(levelname)s] %(message)s"
handlers = [logging.FileHandler("train.log", mode="a"), logging.StreamHandler()]
logging.basicConfig(
format=log_format,
level=logging.INFO,
datefmt="%d-%b-%y %H:%M:%S",
handlers=handlers,
)
logger = logging.getLogger(__name__)

37
idrlnet/net.py
View File

@ -4,11 +4,11 @@ from idrlnet.node import Node
from typing import Tuple, List, Dict, Union
from contextlib import ExitStack
__all__ = ['NetNode']
__all__ = ["NetNode"]
class WrapEvaluate:
def __init__(self, binding_node: 'NetNode'):
def __init__(self, binding_node: "NetNode"):
self.binding_node = binding_node
def __call__(self, inputs):
@ -16,15 +16,23 @@ class WrapEvaluate:
if isinstance(inputs, dict):
keep_type = dict
inputs = torch.cat(
[torch.tensor(inputs[key], dtype=torch.float32) if not isinstance(inputs[key], torch.Tensor) else
inputs[
key] for key in inputs], dim=1)
[
torch.tensor(inputs[key], dtype=torch.float32)
if not isinstance(inputs[key], torch.Tensor)
else inputs[key]
for key in inputs
],
dim=1,
)
with ExitStack() as es:
if self.binding_node.require_no_grad:
es.enter_context(torch.no_grad())
output_var = self.binding_node.net(inputs)
if keep_type == dict:
output_var = {outkey: output_var[:, i:i + 1] for i, outkey in enumerate(self.binding_node.outputs)}
output_var = {
outkey: output_var[:, i : i + 1]
for i, outkey in enumerate(self.binding_node.outputs)
}
return output_var
@ -63,9 +71,18 @@ class NetNode(Node):
def net(self, net):
self._net = net
def __init__(self, inputs: Union[Tuple, List[str]], outputs: Union[Tuple, List[str]],
net: torch.nn.Module, fixed: bool = False, require_no_grad: bool = False, is_reference=False,
name=None, *args, **kwargs):
def __init__(
self,
inputs: Union[Tuple, List[str]],
outputs: Union[Tuple, List[str]],
net: torch.nn.Module,
fixed: bool = False,
require_no_grad: bool = False,
is_reference=False,
name=None,
*args,
**kwargs
):
self.is_reference = is_reference
self.inputs: Union[Tuple, List[str]] = inputs
self.outputs: Union[Tuple, List[str]] = outputs
@ -89,5 +106,5 @@ class NetNode(Node):
def load_state_dict(self, state_dict: Dict[str, torch.Tensor], strict: bool = True):
return self.net.load_state_dict(state_dict, strict)
def state_dict(self, destination=None, prefix: str = '', keep_vars: bool = False):
def state_dict(self, destination=None, prefix: str = "", keep_vars: bool = False):
return self.net.state_dict(destination, prefix, keep_vars)

32
idrlnet/node.py
View File

@ -5,7 +5,7 @@ from idrlnet.torch_util import torch_lambdify
from idrlnet.variable import Variables
from idrlnet.header import DIFF_SYMBOL
__all__ = ['Node']
__all__ = ["Node"]
class Node(object):
@ -58,7 +58,7 @@ class Node(object):
try:
return self._name
except:
self._name = 'Node' + str(id(self))
self._name = "Node" + str(id(self))
return self._name
@name.setter
@ -66,23 +66,33 @@ class Node(object):
self._name = name
@classmethod
def new_node(cls, name: str = None, tf_eq: Callable = None, free_symbols: List[str] = None, *args,
**kwargs) -> 'Node':
def new_node(
cls,
name: str = None,
tf_eq: Callable = None,
free_symbols: List[str] = None,
*args,
**kwargs
) -> "Node":
node = cls()
node.evaluate = LambdaTorchFun(free_symbols, tf_eq, name)
node.inputs = [x for x in free_symbols if DIFF_SYMBOL not in x]
node.derivatives = [x for x in free_symbols if DIFF_SYMBOL in x]
node.outputs = [name, ]
node.outputs = [
name,
]
node.name = name
return node
def __str__(self):
str_list = ["Basic properties:\n",
"name: {}\n".format(self.name),
"inputs: {}\n".format(self.inputs),
"derivatives: {}\n".format(self.derivatives),
"outputs: {}\n".format(self.outputs), ]
return ''.join(str_list)
str_list = [
"Basic properties:\n",
"name: {}\n".format(self.name),
"inputs: {}\n".format(self.inputs),
"derivatives: {}\n".format(self.derivatives),
"outputs: {}\n".format(self.outputs),
]
return "".join(str_list)
class LambdaTorchFun:

44
idrlnet/optim.py
View File

@ -6,7 +6,7 @@ import inspect
import math
from typing import Dict
__all__ = ['get_available_class', 'Optimizable']
__all__ = ["get_available_class", "Optimizable"]
def get_available_class(module, class_name) -> Dict[str, type]:
@ -19,20 +19,28 @@ def get_available_class(module, class_name) -> Dict[str, type]:
:return: A dict mapping from subclass.name to subclass
:rtype: Dict[str, type]
"""
return dict(filter(
lambda x: inspect.isclass(x[1])
and issubclass(x[1], class_name)
and (not x[1] == class_name),
inspect.getmembers(module)))
return dict(
filter(
lambda x: inspect.isclass(x[1])
and issubclass(x[1], class_name)
and (not x[1] == class_name),
inspect.getmembers(module),
)
)
class Optimizable(metaclass=abc.ABCMeta):
"""An abstract class for organizing optimization related configuration and operations.
The interface is implemented by solver.Solver
"""
OPTIMIZER_MAP = get_available_class(module=torch.optim, class_name=torch.optim.Optimizer)
SCHEDULE_MAP = get_available_class(module=torch.optim.lr_scheduler,
class_name=torch.optim.lr_scheduler._LRScheduler)
OPTIMIZER_MAP = get_available_class(
module=torch.optim, class_name=torch.optim.Optimizer
)
SCHEDULE_MAP = get_available_class(
module=torch.optim.lr_scheduler,
class_name=torch.optim.lr_scheduler._LRScheduler,
)
@property
def optimizers(self):
@ -60,23 +68,25 @@ class Optimizable(metaclass=abc.ABCMeta):
self.configure_optimizers()
def parse_optimizer(self, **kwargs):
default_config = dict(optimizer='Adam', lr=1e-3)
default_config.update(kwargs.get('opt_config', {}))
default_config = dict(optimizer="Adam", lr=1e-3)
default_config.update(kwargs.get("opt_config", {}))
self.optimizer_config = default_config
def parse_lr_schedule(self, **kwargs):
default_config = dict(scheduler='ExponentialLR', gamma=math.pow(0.95, 0.001), last_epoch=-1)
default_config.update(kwargs.get('schedule_config', {}))
default_config = dict(
scheduler="ExponentialLR", gamma=math.pow(0.95, 0.001), last_epoch=-1
)
default_config.update(kwargs.get("schedule_config", {}))
self.schedule_config = default_config
def __str__(self):
if 'optimizer_config' in self.__dict__:
if "optimizer_config" in self.__dict__:
opt_str = str(self.optimizer_config)
else:
opt_str = str('optimizer is empty...')
opt_str = str("optimizer is empty...")
if 'schedule_config' in self.__dict__:
if "schedule_config" in self.__dict__:
schedule_str = str(self.schedule_config)
else:
schedule_str = str('scheduler is empty...')
schedule_str = str("scheduler is empty...")
return "\n".join([opt_str, schedule_str])

19
idrlnet/pde.py
View File

@ -6,7 +6,7 @@ from idrlnet.torch_util import _replace_derivatives
from idrlnet.header import DIFF_SYMBOL
from idrlnet.variable import Variables
__all__ = ['PdeNode', 'ExpressionNode']
__all__ = ["PdeNode", "ExpressionNode"]
class PdeEvaluate:
@ -18,8 +18,11 @@ class PdeEvaluate:
def __call__(self, inputs: Variables) -> Variables:
result = Variables()
for node in self.binding_pde.sub_nodes:
sub_inputs = {k: v for k, v in Variables(inputs).items() if
k in node.inputs or k in node.derivatives}
sub_inputs = {
k: v
for k, v in Variables(inputs).items()
if k in node.inputs or k in node.derivatives
}
r = node.evaluate(sub_inputs)
result.update(r)
return result
@ -53,9 +56,9 @@ class PdeNode(Node):
def __init__(self, suffix: str = "", **kwargs):
if len(suffix) > 0:
self.suffix = '[' + kwargs['suffix'] + ']' # todo: check prefix
self.suffix = "[" + kwargs["suffix"] + "]" # todo: check prefix
else:
self.suffix = ''
self.suffix = ""
self.name = type(self).__name__ + self.suffix
self.evaluate = PdeEvaluate(self)
@ -77,8 +80,10 @@ class PdeNode(Node):
def __str__(self):
subnode_str = "\n\n".join(
str(sub_node) + "Equation: \n" + str(self.equations[sub_node.name]) for sub_node in self.sub_nodes)
return super().__str__() + "subnodes".center(30, '-') + '\n' + subnode_str
str(sub_node) + "Equation: \n" + str(self.equations[sub_node.name])
for sub_node in self.sub_nodes
)
return super().__str__() + "subnodes".center(30, "-") + "\n" + subnode_str
# todo: test required

159
idrlnet/pde_op/equations.py
View File

@ -5,7 +5,14 @@ from sympy import Function, Number, symbols
from idrlnet.pde import PdeNode
__all__ = ['DiffusionNode', 'NavierStokesNode', 'WaveNode', 'BurgersNode', 'SchrodingerNode', 'AllenCahnNode']
__all__ = [
"DiffusionNode",
"NavierStokesNode",
"WaveNode",
"BurgersNode",
"SchrodingerNode",
"AllenCahnNode",
]
def symbolize(s, input_variables=None):
@ -19,134 +26,172 @@ def symbolize(s, input_variables=None):
class DiffusionNode(PdeNode):
def __init__(self, T='T', D='D', Q=0, dim=3, time=True, **kwargs):
def __init__(self, T="T", D="D", Q=0, dim=3, time=True, **kwargs):
super().__init__(**kwargs)
self.T = T
x, y, z, t = symbols('x y z t')
input_variables = {'x': x, 'y': y, 'z': z, 't': t}
x, y, z, t = symbols("x y z t")
input_variables = {"x": x, "y": y, "z": z, "t": t}
assert type(T) == str, "T should be string"
T = symbolize(T, input_variables=input_variables)
D = symbolize(D, input_variables=input_variables)
Q = symbolize(Q, input_variables=input_variables)
self.equations = {'diffusion_' + self.T: -Q}
self.equations = {"diffusion_" + self.T: -Q}
if time:
self.equations['diffusion_' + self.T] += T.diff(t)
self.equations["diffusion_" + self.T] += T.diff(t)
coord = [x, y, z]
for i in range(dim):
s = coord[i]
self.equations['diffusion_' + self.T] -= (D * T.diff(s)).diff(s)
self.equations["diffusion_" + self.T] -= (D * T.diff(s)).diff(s)
self.make_nodes()
class NavierStokesNode(PdeNode):
def __init__(self, nu=0.1, rho=1., dim=2., time=False, **kwargs):
def __init__(self, nu=0.1, rho=1.0, dim=2.0, time=False, **kwargs):
super().__init__(**kwargs)
self.dim = dim
assert self.dim in [2, 3], "dim should be 2 or 3"
self.time = time
x, y, z, t = symbols('x y z t')
input_variables = {'x': x, 'y': y, 'z': z, 't': t}
x, y, z, t = symbols("x y z t")
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
u = symbolize('u', input_variables)
v = symbolize('v', input_variables)
w = symbolize('w', input_variables) if self.dim == 3 else Number(0)
p = symbolize('p', input_variables)
u = symbolize("u", input_variables)
v = symbolize("v", input_variables)
w = symbolize("w", input_variables) if self.dim == 3 else Number(0)
p = symbolize("p", input_variables)
nu = symbolize(nu, input_variables)
rho = symbolize(rho, input_variables)
mu = rho * nu
self.equations = {'continuity': rho.diff(t) + (rho * u).diff(x) + (rho * v).diff(y) + (rho * w).diff(z),
'momentum_x': ((rho * u).diff(t)
+ (u * ((rho * u).diff(x)) + v * ((rho * u).diff(y)) + w * ((rho * u).diff(z)))
+ p.diff(x)
- (mu * u.diff(x)).diff(x)
- (mu * u.diff(y)).diff(y)
- (mu * u.diff(z)).diff(z)),
'momentum_y': ((rho * v).diff(t)
+ (u * ((rho * v).diff(x)) + v * ((rho * v).diff(y)) + w * ((rho * v).diff(z)))
+ p.diff(y)
- (mu * v.diff(x)).diff(x)
- (mu * v.diff(y)).diff(y)
- (mu * v.diff(z)).diff(z)), }
self.equations = {
"continuity": rho.diff(t)
+ (rho * u).diff(x)
+ (rho * v).diff(y)
+ (rho * w).diff(z),
"momentum_x": (
(rho * u).diff(t)
+ (
u * ((rho * u).diff(x))
+ v * ((rho * u).diff(y))
+ w * ((rho * u).diff(z))
)
+ p.diff(x)
- (mu * u.diff(x)).diff(x)
- (mu * u.diff(y)).diff(y)
- (mu * u.diff(z)).diff(z)
),
"momentum_y": (
(rho * v).diff(t)
+ (
u * ((rho * v).diff(x))
+ v * ((rho * v).diff(y))
+ w * ((rho * v).diff(z))
)
+ p.diff(y)
- (mu * v.diff(x)).diff(x)
- (mu * v.diff(y)).diff(y)
- (mu * v.diff(z)).diff(z)
),
}
if self.dim == 3:
self.equations['momentum_z'] = ((rho * w).diff(t)
+ (u * ((rho * w).diff(x)) + v * ((rho * w).diff(y)) + w * (
(rho * w).diff(z))) + p.diff(z) - (mu * w.diff(x)).diff(x) - (mu * w.diff(y)).diff(y) - (
mu * w.diff(z)).diff(z))
self.equations["momentum_z"] = (
(rho * w).diff(t)
+ (
u * ((rho * w).diff(x))
+ v * ((rho * w).diff(y))
+ w * ((rho * w).diff(z))
)
+ p.diff(z)
- (mu * w.diff(x)).diff(x)
- (mu * w.diff(y)).diff(y)
- (mu * w.diff(z)).diff(z)
)
self.make_nodes()
class WaveNode(PdeNode):
def __init__(self, u='u', c='c', dim=3, time=True, **kwargs):
def __init__(self, u="u", c="c", dim=3, time=True, **kwargs):
super().__init__(**kwargs)
self.u = u
self.dim = dim
self.time = time
x, y, z, t = symbols('x y z t')
input_variables = {'x': x, 'y': y, 'z': z, 't': t}
x, y, z, t = symbols("x y z t")
input_variables = {"x": x, "y": y, "z": z, "t": t}
assert self.dim in [1, 2, 3], "dim should be 1, 2 or 3."
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
assert type(u) == str, "u should be string"
u = symbolize(u, input_variables)
c = symbolize(c, input_variables)
self.equations = {'wave_equation': (u.diff(t, 2)
- (c ** 2 * u.diff(x)).diff(x)
- (c ** 2 * u.diff(y)).diff(y)
- (c ** 2 * u.diff(z)).diff(z))}
self.equations = {
"wave_equation": (
u.diff(t, 2)
- (c ** 2 * u.diff(x)).diff(x)
- (c ** 2 * u.diff(y)).diff(y)
- (c ** 2 * u.diff(z)).diff(z)
)
}
self.make_nodes()
class BurgersNode(PdeNode):
def __init__(self, u: str = 'u', v='v'):
def __init__(self, u: str = "u", v="v"):
super().__init__()
x, t = symbols('x t')
input_variables = {'x': x, 't': t}
x, t = symbols("x t")
input_variables = {"x": x, "t": t}
assert type(u) == str, "u needs to be string"
u = symbolize(u, input_variables)
v = symbolize(v, input_variables)
self.equations = {f'burgers_{str(u)}': (u.diff(t) + u * u.diff(x) - v * (u.diff(x)).diff(x))}
self.equations = {
f"burgers_{str(u)}": (u.diff(t) + u * u.diff(x) - v * (u.diff(x)).diff(x))
}
self.make_nodes()
class SchrodingerNode(PdeNode):
def __init__(self, u='u', v='v', c=0.5):
def __init__(self, u="u", v="v", c=0.5):
super().__init__()
self.c = c
x, t = symbols('x t')
input_variables = {'x': x, 't': t}
x, t = symbols("x t")
input_variables = {"x": x, "t": t}
assert type(u) == str, "u should be string"
u = symbolize(u, input_variables)
assert type(v) == str, "v should be string"
v = symbolize(v, input_variables)
self.equations = {'real': u.diff(t) + self.c * v.diff(x, 2) + (u ** 2 + v ** 2) * v,
'imaginary': v.diff(t) - self.c * u.diff(x, 2) - (u ** 2 + v ** 2) * u}
self.equations = {
"real": u.diff(t) + self.c * v.diff(x, 2) + (u ** 2 + v ** 2) * v,
"imaginary": v.diff(t) - self.c * u.diff(x, 2) - (u ** 2 + v ** 2) * u,
}
self.make_nodes()
class AllenCahnNode(PdeNode):
def __init__(self, u='u', gamma_1=0.0001, gamma_2=5):
def __init__(self, u="u", gamma_1=0.0001, gamma_2=5):
super().__init__()
self.gama_1 = gamma_1
self.gama_2 = gamma_2
x, t = symbols('x t')
input_variables = {'x': x, 't': t}
x, t = symbols("x t")
input_variables = {"x": x, "t": t}
assert type(u) == str, "u should be string"
u = symbolize(u, input_variables)
self.equations = {'AllenCahn_' + str(u): u.diff(t) - self.gama_1 * u.diff(x, 2) - self.gama_2 * (u - u ** 3)}
self.equations = {
"AllenCahn_"
+ str(u): u.diff(t)
- self.gama_1 * u.diff(x, 2)
- self.gama_2 * (u - u ** 3)
}
self.make_nodes()

231
idrlnet/pde_op/operator.py
View File

@ -11,7 +11,16 @@ from typing import Union, List
from idrlnet.torch_util import integral, _replace_derivatives, torch_lambdify
from idrlnet.variable import Variables
__all__ = ['NormalGradient', 'Difference', 'Derivative', 'Curl', 'Divergence', 'ICNode', 'Int1DNode', 'IntEq']
__all__ = [
"NormalGradient",
"Difference",
"Derivative",
"Curl",
"Divergence",
"ICNode",
"Int1DNode",
"IntEq",
]
class NormalGradient(PdeNode):
@ -21,48 +30,53 @@ class NormalGradient(PdeNode):
self.dim = dim
self.time = time
x, y, z, normal_x, normal_y, normal_z, t = symbols('x y z normal_x normal_y normal_z t')
x, y, z, normal_x, normal_y, normal_z, t = symbols(
"x y z normal_x normal_y normal_z t"
)
input_variables = {'x': x,
'y': y,
'z': z,
't': t}
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
T = Function(T)(*input_variables)
self.equations = {'normal_gradient_' + self.T: (normal_x * T.diff(x)
+ normal_y * T.diff(y)
+ normal_z * T.diff(z))}
self.equations = {
"normal_gradient_"
+ self.T: (
normal_x * T.diff(x) + normal_y * T.diff(y) + normal_z * T.diff(z)
)
}
self.make_nodes()
class Difference(PdeNode):
def __init__(self, T: Union[str, Symbol, float, int], S: Union[str, Symbol, float, int], dim=3, time=True):
def __init__(
self,
T: Union[str, Symbol, float, int],
S: Union[str, Symbol, float, int],
dim=3,
time=True,
):
super().__init__()
self.T = T
self.S = S
self.dim = dim
self.time = time
x, y, z = symbols('x y z')
t = Symbol('t')
input_variables = {'x': x,
'y': y,
'z': z,
't': t}
x, y, z = symbols("x y z")
t = Symbol("t")
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
# variables to set the gradients (example Temperature)
T = Function(T)(*input_variables)
@ -70,32 +84,35 @@ class Difference(PdeNode):
# set equations
self.equations = {}
self.equations['difference_' + self.T + '_' + self.S] = T - S
self.equations["difference_" + self.T + "_" + self.S] = T - S
self.make_nodes()
class Derivative(PdeNode):
def __init__(self, T: Union[str, Symbol, float, int], p: Union[str, Symbol], S: Union[str, Symbol, float, int] = 0.,
dim=3, time=True):
def __init__(
self,
T: Union[str, Symbol, float, int],
p: Union[str, Symbol],
S: Union[str, Symbol, float, int] = 0.0,
dim=3,
time=True,
):
super().__init__()
self.T = T
self.S = S
self.dim = dim
self.time = time
x, y, z = symbols('x y z')
t = Symbol('t')
x, y, z = symbols("x y z")
t = Symbol("t")
input_variables = {'x': x,
'y': y,
'z': z,
't': t}
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
if type(S) is str:
S = Function(S)(*input_variables)
elif type(S) in [float, int]:
@ -105,9 +122,11 @@ class Derivative(PdeNode):
T = Function(T)(*input_variables)
self.equations = {}
if isinstance(S, Function):
self.equations['derivative_' + self.T + ':' + str(p) + '_' + str(self.S)] = T.diff(p) - S
self.equations[
"derivative_" + self.T + ":" + str(p) + "_" + str(self.S)
] = (T.diff(p) - S)
else:
self.equations['derivative_' + self.T + ':' + str(p)] = T.diff(p) - S
self.equations["derivative_" + self.T + ":" + str(p)] = T.diff(p) - S
self.make_nodes()
@ -115,9 +134,9 @@ class Curl(PdeNode):
def __init__(self, vector, curl_name=None):
super().__init__()
if curl_name is None:
curl_name = ['u', 'v', 'w']
x, y, z = symbols('x y z')
input_variables = {'x': x, 'y': y, 'z': z}
curl_name = ["u", "v", "w"]
x, y, z = symbols("x y z")
input_variables = {"x": x, "y": y, "z": z}
v_0 = vector[0]
v_1 = vector[1]
@ -146,11 +165,11 @@ class Curl(PdeNode):
class Divergence(PdeNode):
def __init__(self, vector, div_name='div_v'):
def __init__(self, vector, div_name="div_v"):
super().__init__()
x, y, z = symbols('x y z')
x, y, z = symbols("x y z")
input_variables = {'x': x, 'y': y, 'z': z}
input_variables = {"x": x, "y": y, "z": z}
v_0 = vector[0]
v_1 = vector[1]
@ -174,9 +193,13 @@ class Divergence(PdeNode):
class ICNode(PdeNode):
def __init__(self, T: Union[str, Symbol, int, float, List[Union[str, Symbol, int, float]]], dim: int = 2,
time: bool = False,
reduce_name: str = None):
def __init__(
self,
T: Union[str, Symbol, int, float, List[Union[str, Symbol, int, float]]],
dim: int = 2,
time: bool = False,
reduce_name: str = None,
):
super().__init__()
if reduce_name is None:
reduce_name = str(T)
@ -185,28 +208,26 @@ class ICNode(PdeNode):
self.time = time
self.reduce_name = reduce_name
x, y, z = symbols('x y z')
normal_x = Symbol('normal_x')
normal_y = Symbol('normal_y')
normal_z = Symbol('normal_z')
area = Symbol('area')
x, y, z = symbols("x y z")
normal_x = Symbol("normal_x")
normal_y = Symbol("normal_y")
normal_z = Symbol("normal_z")
area = Symbol("area")
t = Symbol('t')
t = Symbol("t")
input_variables = {'x': x,
'y': y,
'z': z,
't': t}
input_variables = {"x": x, "y": y, "z": z, "t": t}
if self.dim == 1:
input_variables.pop('y')
input_variables.pop('z')
input_variables.pop("y")
input_variables.pop("z")
elif self.dim == 2:
input_variables.pop('z')
input_variables.pop("z")
if not self.time:
input_variables.pop('t')
input_variables.pop("t")
def sympify_T(T: Union[str, Symbol, int, float, List[Union[str, Symbol, int, float]]]) -> Union[
Symbol, List[Symbol]]:
def sympify_T(
T: Union[str, Symbol, int, float, List[Union[str, Symbol, int, float]]]
) -> Union[Symbol, List[Symbol]]:
if isinstance(T, list):
return [sympify_T(_T) for _T in T]
elif type(T) is str:
@ -220,23 +241,33 @@ class ICNode(PdeNode):
self.equations = {}
if isinstance(T, list):
if self.dim == 3:
self.equations['integral_' + self.reduce_name] = integral((normal_x * T[0]
+ normal_y * T[1]
+ normal_z * T[2]) * area)
self.equations["integral_" + self.reduce_name] = integral(
(normal_x * T[0] + normal_y * T[1] + normal_z * T[2]) * area
)
if self.dim == 2:
self.equations['integral_' + self.reduce_name] = integral((normal_x * T[0]
+ normal_y * T[1]) * area)
self.equations["integral_" + self.reduce_name] = integral(
(normal_x * T[0] + normal_y * T[1]) * area
)
else:
self.equations['integral_' + self.reduce_name] = integral(T * area)
self.equations["integral_" + self.reduce_name] = integral(T * area)
self.make_nodes()
class Int1DNode(PdeNode):
counter = 0
def __init__(self, expression, expression_name, lb, ub, var: Union[str, sp.Symbol] = 's', degree=20, **kwargs):
def __init__(
self,
expression,
expression_name,
lb,
ub,
var: Union[str, sp.Symbol] = "s",
degree=20,
**kwargs
):
super().__init__(**kwargs)
x = sp.Symbol('x')
x = sp.Symbol("x")
self.equations = {}
self.var = sp.Symbol(var) if isinstance(var, str) else var
self.degree = degree
@ -265,13 +296,19 @@ class Int1DNode(PdeNode):
else:
raise
if 'funs' in kwargs.keys():
self.funs = kwargs['funs']
if "funs" in kwargs.keys():
self.funs = kwargs["funs"]
else:
self.funs = {}
self.computable_name = set(*[fun['output_map'].values() for _, fun in self.funs.items()])
self.computable_name = set(
*[fun["output_map"].values() for _, fun in self.funs.items()]
)
self.fun_require_input = set(
*[set(fun['eval'].inputs) - set(fun['input_map'].keys()) for _, fun in self.funs.items()])
*[
set(fun["eval"].inputs) - set(fun["input_map"].keys())
for _, fun in self.funs.items()
]
)
self.make_nodes()
@ -300,13 +337,22 @@ class Int1DNode(PdeNode):
self.derivatives = []
self.outputs = [x for x in name_set]
def new_node(self, name: str = None, tf_eq: sp.Expr = None, free_symbols: List[str] = None, *args, **kwargs):
def new_node(
self,
name: str = None,
tf_eq: sp.Expr = None,
free_symbols: List[str] = None,
*args,
**kwargs
):
out_symbols = [x for x in free_symbols if x not in self.funs.keys()]
lb_lambda = torch_lambdify(out_symbols, self.lb)
ub_lambda = torch_lambdify(out_symbols, self.ub)
eq_lambda = torch_lambdify([*free_symbols, self.var.name], tf_eq)
node = Node()
node.evaluate = IntEq(self, lb_lambda, ub_lambda, out_symbols, free_symbols, eq_lambda, name)
node.evaluate = IntEq(
self, lb_lambda, ub_lambda, out_symbols, free_symbols, eq_lambda, name
)
node.inputs = [x for x in free_symbols if x not in self.funs.keys()]
node.derivatives = []
node.outputs = [name]
@ -315,7 +361,16 @@ class Int1DNode(PdeNode):
class IntEq:
def __init__(self, binding_node, lb_lambda, ub_lambda, out_symbols, free_symbols, eq_lambda, name):
def __init__(
self,
binding_node,
lb_lambda,
ub_lambda,
out_symbols,
free_symbols,
eq_lambda,
name,
):
self.binding_node = binding_node
self.lb_lambda = lb_lambda
self.ub_lambda = ub_lambda
@ -326,8 +381,12 @@ class IntEq:
def __call__(self, var: Variables):
var = {k: v for k, v in var.items()}
lb_value = self.lb_lambda(**{k: v for k, v in var.items() if k in self.out_symbols})
ub_value = self.ub_lambda(**{k: v for k, v in var.items() if k in self.out_symbols})
lb_value = self.lb_lambda(
**{k: v for k, v in var.items() if k in self.out_symbols}
)
ub_value = self.ub_lambda(
**{k: v for k, v in var.items() if k in self.out_symbols}
)
xx = dict()
for syp in self.free_symbols:
@ -347,19 +406,21 @@ class IntEq:
new_var = dict()
for _, fun in self.binding_node.funs.items():
input_map = fun['input_map']
output_map = fun['output_map']
input_map = fun["input_map"]
output_map = fun["output_map"]
tmp_var = dict()
for k, v in xx.items():
tmp_var[k] = v
for k, v in input_map.items():
tmp_var[k] = quad_s
res = fun['eval'].evaluate(tmp_var)
res = fun["eval"].evaluate(tmp_var)
for k, v in output_map.items():
res[v] = res.pop(k)
new_var.update(res)
xx.update(new_var)
values = quad_w * self.eq_lambda(**dict(**{self.binding_node.var.name: quad_s}, **xx))
values = quad_w * self.eq_lambda(
**dict(**{self.binding_node.var.name: quad_s}, **xx)
)
values = values.reshape(shape)
return {self.name: values.sum(1, keepdim=True)}

18
idrlnet/receivers.py
View File

@ -6,20 +6,20 @@ from typing import Dict, List
class Signal(Enum):
REGISTER = 'signal_register'
SOLVE_START = 'signal_solve_start'
TRAIN_PIPE_START = 'signal_train_pipe_start'
BEFORE_COMPUTE_LOSS = 'before_compute_loss'
AFTER_COMPUTE_LOSS = 'compute_loss'
BEFORE_BACKWARD = 'signal_before_backward'
TRAIN_PIPE_END = 'signal_train_pipe_end'
SOLVE_END = 'signal_solve_end'
REGISTER = "signal_register"
SOLVE_START = "signal_solve_start"
TRAIN_PIPE_START = "signal_train_pipe_start"
BEFORE_COMPUTE_LOSS = "before_compute_loss"
AFTER_COMPUTE_LOSS = "compute_loss"
BEFORE_BACKWARD = "signal_before_backward"
TRAIN_PIPE_END = "signal_train_pipe_end"
SOLVE_END = "signal_solve_end"
class Receiver(metaclass=abc.ABCMeta):
@abc.abstractmethod
def receive_notify(self, obj: object, message: Dict):
raise NotImplementedError('Method receive_notify() not implemented!')
raise NotImplementedError("Method receive_notify() not implemented!")
class Notifier:

288
idrlnet/solver.py
View File

@ -15,7 +15,7 @@ from idrlnet.variable import Variables, DomainVariables
from idrlnet.graph import VertexTaskPipeline
import idrlnet
__all__ = ['Solver']
__all__ = ["Solver"]
class Solver(Notifier, Optimizable):
@ -65,20 +65,23 @@ class Solver(Notifier, Optimizable):
:param kwargs:
"""
def __init__(self, sample_domains: Tuple[Union[DataNode, SampleDomain], ...],
netnodes: List[NetNode],
pdes: Optional[List] = None,
network_dir: str = './network_dir',
summary_dir: Optional[str] = None,
max_iter: int = 1000,
save_freq: int = 100,
print_freq: int = 10,
loading: bool = True,
init_network_dirs: Optional[List[str]] = None,
opt_config: Dict = None,
schedule_config: Dict = None,
result_dir='train_domain/results',
**kwargs):
def __init__(
self,
sample_domains: Tuple[Union[DataNode, SampleDomain], ...],
netnodes: List[NetNode],
pdes: Optional[List] = None,
network_dir: str = "./network_dir",
summary_dir: Optional[str] = None,
max_iter: int = 1000,
save_freq: int = 100,
print_freq: int = 10,
loading: bool = True,
init_network_dirs: Optional[List[str]] = None,
opt_config: Dict = None,
schedule_config: Dict = None,
result_dir="train_domain/results",
**kwargs,
):
self.network_dir: str = network_dir
self.domain_losses = {domain.name: domain.loss_fn for domain in sample_domains}
@ -96,8 +99,16 @@ class Solver(Notifier, Optimizable):
self.save_freq = save_freq
self.print_freq = print_freq
try:
self.parse_configure(**{**({"opt_config": opt_config} if opt_config is not None else {}),
**({"schedule_config": schedule_config} if schedule_config is not None else {})})
self.parse_configure(
**{
**({"opt_config": opt_config} if opt_config is not None else {}),
**(
{"schedule_config": schedule_config}
if schedule_config is not None
else {}
),
}
)
except Exception:
logger.error("Optimizer configuration failed")
raise
@ -109,7 +120,10 @@ class Solver(Notifier, Optimizable):
pass
self.sample_domains: Tuple[DataNode, ...] = sample_domains
self.summary_dir = self.network_dir if summary_dir is None else summary_dir
self.receivers: List[Receiver] = [SummaryReceiver(self.summary_dir), HandleResultReceiver(result_dir)]
self.receivers: List[Receiver] = [
SummaryReceiver(self.summary_dir),
HandleResultReceiver(result_dir),
]
@property
def network_dir(self):
@ -136,12 +150,23 @@ class Solver(Notifier, Optimizable):
:return: A list of trainable parameters.
:rtype: List[torch.nn.parameter.Parameter]
"""
parameter_list = list(map(lambda _net_node: {'params': _net_node.net.parameters()},
filter(lambda _net_node: not _net_node.is_reference and (not _net_node.fixed),
self.netnodes)))
parameter_list = list(
map(
lambda _net_node: {"params": _net_node.net.parameters()},
filter(
lambda _net_node: not _net_node.is_reference
and (not _net_node.fixed),
self.netnodes,
),
)
)
if len(parameter_list) == 0:
'''To make sure successful initialization of optimizers.'''
parameter_list = [torch.nn.parameter.Parameter(data=torch.Tensor([0.]), requires_grad=True)]
"""To make sure successful initialization of optimizers."""
parameter_list = [
torch.nn.parameter.Parameter(
data=torch.Tensor([0.0]), requires_grad=True
)
]
logger.warning("No trainable parameters found!")
return parameter_list
@ -158,15 +183,15 @@ class Solver(Notifier, Optimizable):
"""return sovler information, it will return components recursively"""
str_list = []
str_list.append("nets: \n")
str_list.append(''.join([str(net) for net in self.netnodes]))
str_list.append("".join([str(net) for net in self.netnodes]))
str_list.append("domains: \n")
str_list.append(''.join([str(domain) for domain in self.sample_domains]))
str_list.append('\n')
str_list.append('optimizer config:\n')
str_list.append("".join([str(domain) for domain in self.sample_domains]))
str_list.append("\n")
str_list.append("optimizer config:\n")
for i, _class in enumerate(type(self).mro()):
if _class == Optimizable:
str_list.append(super(type(self).mro()[i - 1], self).__str__())
return ''.join(str_list)
return "".join(str_list)
def set_param_ranges(self, param_ranges: Dict):
for domain in self.sample_domains:
@ -184,7 +209,7 @@ class Solver(Notifier, Optimizable):
for value in self.sample_domains:
if value.name == name:
return value
raise KeyError(f'domain {name} not exist!')
raise KeyError(f"domain {name} not exist!")
def generate_computation_pipeline(self):
"""Generate computation pipeline for all domains.
@ -195,28 +220,40 @@ class Solver(Notifier, Optimizable):
self.vertex_pipelines = {}
for domain_name, var in in_var.items():
logger.info(f"Constructing computation graph for domain <{domain_name}>")
self.vertex_pipelines[domain_name] = VertexTaskPipeline(self.netnodes + self.pdes, var,
self.outvar_dict_index[domain_name])
self.vertex_pipelines[domain_name] = VertexTaskPipeline(
self.netnodes + self.pdes, var, self.outvar_dict_index[domain_name]
)
self.vertex_pipelines[domain_name].display(
os.path.join(self.network_dir, f'{domain_name}_{self.global_step}.png'))
os.path.join(self.network_dir, f"{domain_name}_{self.global_step}.png")
)
def forward_through_all_graph(self, invar_dict: DomainVariables,
req_outvar_dict_index: Dict[str, List[str]]) -> DomainVariables:
def forward_through_all_graph(
self, invar_dict: DomainVariables, req_outvar_dict_index: Dict[str, List[str]]
) -> DomainVariables:
outvar_dict = {}
for (key, req_outvar_names) in req_outvar_dict_index.items():
outvar_dict[key] = self.vertex_pipelines[key].forward_pipeline(invar_dict[key], req_outvar_names)
outvar_dict[key] = self.vertex_pipelines[key].forward_pipeline(
invar_dict[key], req_outvar_names
)
return outvar_dict
def append_sample_domain(self, datanode):
self.sample_domains = self.sample_domains + (datanode,)
def _generate_dict_index(self) -> None:
self.invar_dict_index = {domain.name: domain.inputs for domain in self.sample_domains}
self.outvar_dict_index = {domain.name: domain.outputs for domain in self.sample_domains}
self.lambda_dict_index = {domain.name: domain.lambda_outputs for domain in self.sample_domains}
self.invar_dict_index = {
domain.name: domain.inputs for domain in self.sample_domains
}
self.outvar_dict_index = {
domain.name: domain.outputs for domain in self.sample_domains
}
self.lambda_dict_index = {
domain.name: domain.lambda_outputs for domain in self.sample_domains
}
def generate_in_out_dict(self, samples: DomainVariables) -> \
Tuple[DomainVariables, DomainVariables, DomainVariables]:
def generate_in_out_dict(
self, samples: DomainVariables
) -> Tuple[DomainVariables, DomainVariables, DomainVariables]:
invar_dict = {}
for domain, variable in samples.items():
inner = {}
@ -226,20 +263,40 @@ class Solver(Notifier, Optimizable):
invar_dict[domain] = inner
invar_dict = {
domain: Variables({key: val for key, val in variable.items() if key in self.invar_dict_index[domain]}) for
domain, variable in samples.items()}
domain: Variables(
{
key: val
for key, val in variable.items()
if key in self.invar_dict_index[domain]
}
)
for domain, variable in samples.items()
}
outvar_dict = {
domain: Variables({key: val for key, val in variable.items() if key in self.outvar_dict_index[domain]}) for
domain, variable in samples.items()}
domain: Variables(
{
key: val
for key, val in variable.items()
if key in self.outvar_dict_index[domain]
}
)
for domain, variable in samples.items()
}
lambda_dict = {
domain: Variables({key: val for key, val in variable.items() if key in self.lambda_dict_index[domain]}) for
domain, variable in samples.items()}
domain: Variables(
{
key: val
for key, val in variable.items()
if key in self.lambda_dict_index[domain]
}
)
for domain, variable in samples.items()
}
return invar_dict, outvar_dict, lambda_dict
def solve(self):
"""After the solver instance is initialized, the method could be called to solve the entire problem.
"""
self.notify(self, message={Signal.SOLVE_START: 'default'})
"""After the solver instance is initialized, the method could be called to solve the entire problem."""
self.notify(self, message={Signal.SOLVE_START: "default"})
while self.global_step < self.max_iter:
loss = self.train_pipe()
if self.global_step % self.print_freq == 0:
@ -247,13 +304,13 @@ class Solver(Notifier, Optimizable):
if self.global_step % self.save_freq == 0:
self.save()
logger.info("Training Stage Ends")
self.notify(self, message={Signal.SOLVE_END: 'default'})
self.notify(self, message={Signal.SOLVE_END: "default"})
def train_pipe(self):
"""Sample once; calculate the loss once; backward propagation once
:return: None
"""
self.notify(self, message={Signal.TRAIN_PIPE_START: 'defaults'})
self.notify(self, message={Signal.TRAIN_PIPE_START: "defaults"})
for opt in self.optimizers:
opt.zero_grad()
samples = self.sample_variables_from_domains()
@ -263,7 +320,7 @@ class Solver(Notifier, Optimizable):
loss = self.compute_loss(in_var, pred_out_sample, true_out, lambda_out)
except RuntimeError:
raise
self.notify(self, message={Signal.BEFORE_BACKWARD: 'defaults'})
self.notify(self, message={Signal.BEFORE_BACKWARD: "defaults"})
loss.backward()
for opt in self.optimizers:
opt.step()
@ -271,40 +328,64 @@ class Solver(Notifier, Optimizable):
for scheduler in self.schedulers:
scheduler.step(self.global_step)
self.notify(self, message={Signal.TRAIN_PIPE_END: 'defaults'})
self.notify(self, message={Signal.TRAIN_PIPE_END: "defaults"})
return loss
def compute_loss(self, in_var: DomainVariables, pred_out_sample: DomainVariables,
true_out: DomainVariables,
lambda_out: DomainVariables) -> torch.Tensor:
"""Compute the total loss in one epoch.
"""
def compute_loss(
self,
in_var: DomainVariables,
pred_out_sample: DomainVariables,
true_out: DomainVariables,
lambda_out: DomainVariables,
) -> torch.Tensor:
"""Compute the total loss in one epoch."""
diff = dict()
for domain_name, domain_val in true_out.items():
if len(domain_val) == 0:
continue
diff[domain_name] = pred_out_sample[domain_name] - domain_val.to_torch_tensor_()
diff[domain_name] = (
pred_out_sample[domain_name] - domain_val.to_torch_tensor_()
)
diff[domain_name].update(lambda_out[domain_name])
diff[domain_name].update(area=in_var[domain_name]['area'])
diff[domain_name].update(area=in_var[domain_name]["area"])
for domain, var in diff.items():
lambda_diff = dict()
for constraint, _ in var.items():
if 'lambda_' + constraint in in_var[domain].keys():
lambda_diff['lambda_' + constraint] = in_var[domain]['lambda_' + constraint]
if "lambda_" + constraint in in_var[domain].keys():
lambda_diff["lambda_" + constraint] = in_var[domain][
"lambda_" + constraint
]
var.update(lambda_diff)
self.loss_component = Variables(
ChainMap(
*[diff[domain_name].weighted_loss(f"{domain_name}_loss",
loss_function=self.domain_losses[domain_name]) for
domain_name, domain_val in
diff.items()]))
*[
diff[domain_name].weighted_loss(
f"{domain_name}_loss",
loss_function=self.domain_losses[domain_name],
)
for domain_name, domain_val in diff.items()
]
)
)
self.notify(self, message={Signal.BEFORE_COMPUTE_LOSS: {**self.loss_component}})
loss = sum({domain_name: self.get_sample_domain(domain_name).sigma * self.loss_component[f"{domain_name}_loss"] for
domain_name in diff}.values())
self.notify(self, message={Signal.AFTER_COMPUTE_LOSS: {**self.loss_component, **{'total_loss': loss}}})
loss = sum(
{
domain_name: self.get_sample_domain(domain_name).sigma
* self.loss_component[f"{domain_name}_loss"]
for domain_name in diff
}.values()
)
self.notify(
self,
message={
Signal.AFTER_COMPUTE_LOSS: {
**self.loss_component,
**{"total_loss": loss},
}
},
)
return loss
def infer_step(self, domain_attr: Dict[str, List[str]]) -> DomainVariables:
@ -323,40 +404,46 @@ class Solver(Notifier, Optimizable):
return {data_node.name: data_node.sample() for data_node in self.sample_domains}
def save(self):
"""Save parameters of netnodes and the global step to `model.ckpt`.
"""
save_path = os.path.join(self.network_dir, 'model.ckpt')
"""Save parameters of netnodes and the global step to `model.ckpt`."""
save_path = os.path.join(self.network_dir, "model.ckpt")
logger.info("save to path: {}".format(os.path.abspath(save_path)))
save_dict = {f"{net_node.name}_dict": net_node.state_dict() for net_node in
filter(lambda _net: not _net.is_reference, self.netnodes)}
save_dict = {
f"{net_node.name}_dict": net_node.state_dict()
for net_node in filter(lambda _net: not _net.is_reference, self.netnodes)
}
for i, opt in enumerate(self.optimizers):
save_dict['optimizer_{}_dict'.format(i)] = opt.state_dict()
save_dict['global_step'] = self.global_step
save_dict["optimizer_{}_dict".format(i)] = opt.state_dict()
save_dict["global_step"] = self.global_step
torch.save(save_dict, save_path)
def init_load(self):
for network_dir in self.init_network_dirs:
save_path = os.path.join(network_dir, 'model.ckpt')
save_path = os.path.join(network_dir, "model.ckpt")
save_dict = torch.load(save_path)
for net_node in self.netnodes:
if f"{net_node.name}_dict" in save_dict.keys() and not net_node.is_reference:
if (
f"{net_node.name}_dict" in save_dict.keys()
and not net_node.is_reference
):
net_node.load_state_dict(save_dict[f"{net_node.name}_dict"])
logger.info(f"Successfully loading initialization {net_node.name}.")
def load(self):
"""Load parameters of netnodes and the global step from `model.ckpt`.
"""
save_path = os.path.join(self.network_dir, 'model.ckpt')
"""Load parameters of netnodes and the global step from `model.ckpt`."""
save_path = os.path.join(self.network_dir, "model.ckpt")
if not idrlnet.GPU_ENABLED:
save_dict = torch.load(save_path, map_location=torch.device('cpu'))
save_dict = torch.load(save_path, map_location=torch.device("cpu"))
else:
save_dict = torch.load(save_path)
# todo: save on CPU, load on GPU
for i, opt in enumerate(self.optimizers):
opt.load_state_dict(save_dict['optimizer_{}_dict'.format(i)])
self.global_step = save_dict['global_step']
opt.load_state_dict(save_dict["optimizer_{}_dict".format(i)])
self.global_step = save_dict["global_step"]
for net_node in self.netnodes:
if f"{net_node.name}_dict" in save_dict.keys() and not net_node.is_reference:
if (
f"{net_node.name}_dict" in save_dict.keys()
and not net_node.is_reference
):
net_node.load_state_dict(save_dict[f"{net_node.name}_dict"])
logger.info(f"Successfully loading {net_node.name}.")
@ -364,27 +451,34 @@ class Solver(Notifier, Optimizable):
"""
Call interfaces of ``Optimizable``
"""
opt = self.optimizer_config['optimizer']
opt = self.optimizer_config["optimizer"]
if isinstance(opt, str) and opt in Optimizable.OPTIMIZER_MAP:
opt = Optimizable.OPTIMIZER_MAP[opt](self.trainable_parameters,
**{k: v for k, v in self.optimizer_config.items() if k != 'optimizer'})
opt = Optimizable.OPTIMIZER_MAP[opt](
self.trainable_parameters,
**{k: v for k, v in self.optimizer_config.items() if k != "optimizer"},
)
elif isinstance(opt, Callable):
opt = opt
else:
raise NotImplementedError(
'The optimizer is not implemented. You may use one of the following optimizer:\n' + '\n'.join(
Optimizable.OPTIMIZER_MAP.keys()) + '\n Example: opt_config=dict(optimizer="Adam", lr=1e-3)')
"The optimizer is not implemented. You may use one of the following optimizer:\n"
+ "\n".join(Optimizable.OPTIMIZER_MAP.keys())
+ '\n Example: opt_config=dict(optimizer="Adam", lr=1e-3)'
)
lr_scheduler = self.schedule_config['scheduler']
lr_scheduler = self.schedule_config["scheduler"]
if isinstance(lr_scheduler, str) and lr_scheduler in Optimizable.SCHEDULE_MAP:
lr_scheduler = Optimizable.SCHEDULE_MAP[lr_scheduler](opt,
**{k: v for k, v in self.schedule_config.items() if
k != 'scheduler'})
lr_scheduler = Optimizable.SCHEDULE_MAP[lr_scheduler](
opt,
**{k: v for k, v in self.schedule_config.items() if k != "scheduler"},
)
elif isinstance(lr_scheduler, Callable):
lr_scheduler = lr_scheduler
else:
raise NotImplementedError(
'The scheduler is not implemented. You may use one of the following scheduler:\n' + '\n'.join(
Optimizable.SCHEDULE_MAP.keys()) + '\n Example: schedule_config=dict(scheduler="ExponentialLR", gamma=0.999')
"The scheduler is not implemented. You may use one of the following scheduler:\n"
+ "\n".join(Optimizable.SCHEDULE_MAP.keys())
+ '\n Example: schedule_config=dict(scheduler="ExponentialLR", gamma=0.999'
)
self.optimizers = [opt]
self.schedulers = [lr_scheduler]

60
idrlnet/torch_util.py
View File

@ -10,7 +10,7 @@ import torch
from idrlnet.header import DIFF_SYMBOL
from functools import reduce
__all__ = ['integral', 'torch_lambdify']
__all__ = ["integral", "torch_lambdify"]
def integral_fun(x):
@ -19,7 +19,7 @@ def integral_fun(x):
return x
integral = implemented_function('integral', lambda x: integral_fun(x))
integral = implemented_function("integral", lambda x: integral_fun(x))
def torch_lambdify(r, f, *args, **kwargs):
@ -41,27 +41,27 @@ def torch_lambdify(r, f, *args, **kwargs):
# todo: more functions
TORCH_SYMPY_PRINTER = {
'sin': torch.sin,
'cos': torch.cos,
'tan': torch.tan,
'exp': torch.exp,
'sqrt': torch.sqrt,
'Abs': torch.abs,
'tanh': torch.tanh,
'DiracDelta': torch.zeros_like,
'Heaviside': lambda x: torch.heaviside(x, torch.tensor([0.])),
'amin': lambda x: reduce(lambda y, z: torch.minimum(y, z), x),
'amax': lambda x: reduce(lambda y, z: torch.maximum(y, z), x),
'Min': lambda *x: reduce(lambda y, z: torch.minimum(y, z), x),
'Max': lambda *x: reduce(lambda y, z: torch.maximum(y, z), x),
'equal': lambda x, y: torch.isclose(x, y),
'Xor': torch.logical_xor,
'log': torch.log,
'sinh': torch.sinh,
'cosh': torch.cosh,
'asin': torch.arcsin,
'acos': torch.arccos,
'atan': torch.arctan,
"sin": torch.sin,
"cos": torch.cos,
"tan": torch.tan,
"exp": torch.exp,
"sqrt": torch.sqrt,
"Abs": torch.abs,
"tanh": torch.tanh,
"DiracDelta": torch.zeros_like,
"Heaviside": lambda x: torch.heaviside(x, torch.tensor([0.0])),
"amin": lambda x: reduce(lambda y, z: torch.minimum(y, z), x),
"amax": lambda x: reduce(lambda y, z: torch.maximum(y, z), x),
"Min": lambda *x: reduce(lambda y, z: torch.minimum(y, z), x),
"Max": lambda *x: reduce(lambda y, z: torch.maximum(y, z), x),
"equal": lambda x, y: torch.isclose(x, y),
"Xor": torch.logical_xor,
"log": torch.log,
"sinh": torch.sinh,
"cosh": torch.cosh,
"asin": torch.arcsin,
"acos": torch.arccos,
"atan": torch.arctan,
}
@ -75,9 +75,12 @@ def _replace_derivatives(expr):
expr = expr.subs(deriv, Function(str(deriv))(*deriv.free_symbols))
while True:
try:
custom_fun = {_fun for _fun in expr.atoms(Function) if
(_fun.class_key()[1] == 0) and (not _fun.class_key()[2] == 'integral')
}.pop()
custom_fun = {
_fun
for _fun in expr.atoms(Function)
if (_fun.class_key()[1] == 0)
and (not _fun.class_key()[2] == "integral")
}.pop()
new_symbol_name = str(custom_fun)
expr = expr.subs(custom_fun, Symbol(new_symbol_name))
except KeyError:
@ -90,7 +93,10 @@ class UnderlineDerivativePrinter(StrPrinter):
return expr.func.__name__
def _print_Derivative(self, expr):
return "".join([str(expr.args[0].func)] + [order * (DIFF_SYMBOL + str(key)) for key, order in expr.args[1:]])
return "".join(
[str(expr.args[0].func)]
+ [order * (DIFF_SYMBOL + str(key)) for key, order in expr.args[1:]]
)
def sstr(expr, **settings):

126
idrlnet/variable.py
View File

@ -13,14 +13,14 @@ from collections import defaultdict
import pandas as pd
from idrlnet.header import DIFF_SYMBOL
__all__ = ['Loss', 'Variables', 'DomainVariables', 'export_var']
__all__ = ["Loss", "Variables", "DomainVariables", "export_var"]
class Loss(enum.Enum):
"""Enumerate loss functions"""
L1 = 'L1'
square = 'square'
L1 = "L1"
square = "square"
class LossFunction:
@ -35,56 +35,67 @@ class LossFunction:
raise NotImplementedError(f"loss function {loss_function} is not defined!")
@staticmethod
def weighted_L1_loss(variables: 'Variables', name: str) -> 'Variables':
loss = 0.
def weighted_L1_loss(variables: "Variables", name: str) -> "Variables":
loss = 0.0
for key, val in variables.items():
if key.startswith("lambda_") or key == 'area':
if key.startswith("lambda_") or key == "area":
continue
elif "lambda_" + key in variables.keys():
loss += torch.sum((torch.abs(val)) * variables["lambda_" + key] * variables["area"])
loss += torch.sum(
(torch.abs(val)) * variables["lambda_" + key] * variables["area"]
)
else:
loss += torch.sum((torch.abs(val)) * variables["area"])
return Variables({name: loss})
@staticmethod
def weighted_square_loss(variables: 'Variables', name: str) -> 'Variables':
loss = 0.
def weighted_square_loss(variables: "Variables", name: str) -> "Variables":
loss = 0.0
for key, val in variables.items():
if key.startswith("lambda_") or key == 'area':
if key.startswith("lambda_") or key == "area":
continue
elif "lambda_" + key in variables.keys():
loss += torch.sum((val ** 2) * variables["lambda_" + key] * variables["area"])
loss += torch.sum(
(val ** 2) * variables["lambda_" + key] * variables["area"]
)
else:
loss += torch.sum((val ** 2) * variables["area"])
return Variables({name: loss})
class Variables(dict):
def __sub__(self, other: 'Variables') -> 'Variables':
def __sub__(self, other: "Variables") -> "Variables":
return Variables(
{key: (self[key] if key in self else 0) - (other[key] if key in other else 0) for key in {**self, **other}})
{
key: (self[key] if key in self else 0)
- (other[key] if key in other else 0)
for key in {**self, **other}
}
)
def weighted_loss(self, name: str, loss_function: Union[Loss, str]) -> 'Variables':
def weighted_loss(self, name: str, loss_function: Union[Loss, str]) -> "Variables":
"""Regard the variable as residuals and reduce to a weighted_loss."""
return LossFunction.weighted_loss(variables=self, loss_function=loss_function, name=name)
return LossFunction.weighted_loss(
variables=self, loss_function=loss_function, name=name
)
def subset(self, subset_keys: List[str]) -> 'Variables':
def subset(self, subset_keys: List[str]) -> "Variables":
"""Construct a new variable with subset references"""
return Variables({name: self[name] for name in subset_keys if name in self})
def to_torch_tensor_(self) -> 'Variables[str, torch.Tensor]':
def to_torch_tensor_(self) -> "Variables[str, torch.Tensor]":
"""Convert the variables to torch.Tensor"""
for key, val in self.items():
if not isinstance(val, torch.Tensor):
self[key] = torch.Tensor(val)
if (not key.startswith('lambda_')) and (not key == 'area'):
if (not key.startswith("lambda_")) and (not key == "area"):
self[key].requires_grad_()
return self
def to_ndarray_(self) -> 'Variables[str, np.ndarray]':
def to_ndarray_(self) -> "Variables[str, np.ndarray]":
"""convert to a numpy based variables"""
for key, val in self.items():
@ -92,7 +103,7 @@ class Variables(dict):
self[key] = val.detach().cpu().numpy()
return self
def to_ndarray(self) -> 'Variables[str, np.ndarray]':
def to_ndarray(self) -> "Variables[str, np.ndarray]":
"""Return a new numpy based variables"""
new_var = Variables()
@ -130,26 +141,36 @@ class Variables(dict):
variables[name] = var_t
return variables
def differentiate_one_step_(self: 'Variables', independent_var: 'Variables', required_derivatives: List[str]):
def differentiate_one_step_(
self: "Variables", independent_var: "Variables", required_derivatives: List[str]
):
"""One order of derivatives will be computed towards the required_derivatives."""
required_derivatives = [d for d in required_derivatives if d not in self]
required_derivatives_set = set(
tuple(required_derivative.split(DIFF_SYMBOL)) for required_derivative in required_derivatives)
tuple(required_derivative.split(DIFF_SYMBOL))
for required_derivative in required_derivatives
)
dependent_var_set = set(tuple(dv.split(DIFF_SYMBOL)) for dv in self.keys())
computable_derivative_dict = defaultdict(set)
for dv, rd in itertools.product(dependent_var_set, required_derivatives_set):
if len(rd) > len(dv) and rd[:len(dv)] == dv and rd[:len(dv) + 1] not in dependent_var_set:
if (
len(rd) > len(dv)
and rd[: len(dv)] == dv
and rd[: len(dv) + 1] not in dependent_var_set
):
computable_derivative_dict[rd[len(dv)]].add(DIFF_SYMBOL.join(dv))
derivative_variables = Variables()
for key, value in computable_derivative_dict.items():
for v in value:
f__x = torch.autograd.grad(self[v],
independent_var[key],
grad_outputs=torch.ones_like(self[v]),
retain_graph=True,
create_graph=True,
allow_unused=True)[0]
f__x = torch.autograd.grad(
self[v],
independent_var[key],
grad_outputs=torch.ones_like(self[v]),
retain_graph=True,
create_graph=True,
allow_unused=True,
)[0]
if f__x is not None:
f__x.requires_grad_()
else:
@ -157,7 +178,9 @@ class Variables(dict):
derivative_variables[DIFF_SYMBOL.join([v, key])] = f__x
self.update(derivative_variables)
def differentiate_(self: 'Variables', independent_var: 'Variables', required_derivatives: List[str]):
def differentiate_(
self: "Variables", independent_var: "Variables", required_derivatives: List[str]
):
"""Derivatives will be computed towards the required_derivatives"""
n_keys = 0
@ -168,8 +191,11 @@ class Variables(dict):
new_keys = len(self.keys())
@staticmethod
def var_differentiate_one_step(dependent_var: 'Variables', independent_var: 'Variables',
required_derivatives: List[str]):
def var_differentiate_one_step(
dependent_var: "Variables",
independent_var: "Variables",
required_derivatives: List[str],
):
"""Perform one step of differentiate towards the required_derivatives"""
dependent_var.differentiate_one_step_(independent_var, required_derivatives)
@ -177,15 +203,15 @@ class Variables(dict):
def to_csv(self, filename: str) -> None:
"""Export variable to csv"""
if not filename.endswith('.csv'):
filename += '.csv'
if not filename.endswith(".csv"):
filename += ".csv"
df = self.to_dataframe()
df.to_csv(filename, index=False)
def to_vtu(self, filename: str, coordinates=None) -> None:
"""Export variable to vtu"""
coordinates = ['x', 'y', 'z'] if coordinates is None else coordinates
coordinates = ["x", "y", "z"] if coordinates is None else coordinates
shape = 0
for axis in coordinates:
if axis not in self.keys():
@ -196,27 +222,29 @@ class Variables(dict):
if value.shape == (1, 1):
self[key] = np.ones(shape) * value
self[key] = np.asarray(self[key], dtype=np.float64)
pointsToVTK(filename,
self[coordinates[0]][:, 0].copy(),
self[coordinates[1]][:, 0].copy(),
self[coordinates[2]][:, 0].copy(),
data={key: value[:, 0].copy() for key, value in self.items()})
pointsToVTK(
filename,
self[coordinates[0]][:, 0].copy(),
self[coordinates[1]][:, 0].copy(),
self[coordinates[2]][:, 0].copy(),
data={key: value[:, 0].copy() for key, value in self.items()},
)
def save(self, path, formats=None):
"""Export variable to various formats"""
if formats is None:
formats = ['np', 'csv', 'vtu']
formats = ["np", "csv", "vtu"]
np_var = self.to_ndarray()
if 'np' in formats:
if "np" in formats:
np.savez(path, **np_var)
if 'csv' in formats:
if "csv" in formats:
np_var.to_csv(path)
if 'vtu' in formats:
if "vtu" in formats:
np_var.to_vtu(filename=path)
@staticmethod
def cat(*var_list) -> 'Variables':
def cat(*var_list) -> "Variables":
"""todo: catenate in var list"""
return Variables()
@ -224,12 +252,14 @@ class Variables(dict):
DomainVariables = Dict[str, Variables]
def export_var(domain_var: DomainVariables, path='./inference_domain/results', formats=None):
def export_var(
domain_var: DomainVariables, path="./inference_domain/results", formats=None
):
"""Export a dict of variables to ``csv``, ``vtu`` or ``npz``."""
if formats is None:
formats = ['csv', 'vtu', 'np']
formats = ["csv", "vtu", "np"]
path = pathlib.Path(path)
path.mkdir(exist_ok=True, parents=True)
for key in domain_var.keys():
domain_var[key].save(os.path.join(path, f'{key}'), formats)
domain_var[key].save(os.path.join(path, f"{key}"), formats)

27
setup.py
View File

@ -1,11 +1,27 @@
import setuptools
import os
import pathlib
here = pathlib.Path(__file__).parent.resolve()
long_description = (here / "README.md").read_text(encoding="utf-8")
def load_requirements(path_dir=here, comment_char="#"):
with open(os.path.join(path_dir, "requirements.txt"), "r") as file:
lines = [line.strip() for line in file.readlines()]
requirements = []
for line in lines:
# filer all comments
if comment_char in line:
line = line[: line.index(comment_char)]
if line: # if requirement is not empty
requirements.append(line)
return requirements
with open("README.md", "r") as fh:
long_description = fh.read()
setuptools.setup(
name="idrlnet", # Replace with your own username
version="0.0.1",
version="0.0.1-rc1",
author="Intelligent Design & Robust Learning lab",
author_email="weipeng@deepinfar.cn",
description="IDRLnet",
@ -18,5 +34,6 @@ setuptools.setup(
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
],
python_requires='>=3.6',
)
python_requires=">=3.6",
install_requires=load_requirements(),
)